public OverlappingTranscript(ICompactId transcriptId, string geneName, bool isCanonical, bool isPartialOverlap)
{
Id = transcriptId;
GeneName = geneName;
IsPartionalOverlap = isPartialOverlap;
IsCanonical = isCanonical;
}
public Transcript(IChromosome chromosome, int start, int end, ICompactId id, ITranslation translation,
BioType bioType, IGene gene, int totalExonLength, byte startExonPhase, bool isCanonical,
ITranscriptRegion[] transcriptRegions, ushort numExons, IInterval[] microRnas, int siftIndex,
int polyPhenIndex, Source source, bool cdsStartNotFound, bool cdsEndNotFound, int[] selenocysteines,
IRnaEdit[] rnaEdits)
{
Chromosome = chromosome;
Start = start;
End = end;
Id = id;
Translation = translation;
BioType = bioType;
Gene = gene;
TotalExonLength = totalExonLength;
StartExonPhase = startExonPhase;
IsCanonical = isCanonical;
TranscriptRegions = transcriptRegions;
NumExons = numExons;
MicroRnas = microRnas;
SiftIndex = siftIndex;
PolyPhenIndex = polyPhenIndex;
Source = source;
CdsStartNotFound = cdsStartNotFound;
CdsEndNotFound = cdsEndNotFound;
Selenocysteines = selenocysteines;
RnaEdits = rnaEdits;
}
private static string CombineIdAndVersion(ICompactId id, byte version) => id + "." + version;
