public static void CheckBins(Dictionary <int, int> nonZeroBinValues, IBins <int> intBins)
{
for (int i = 0; i < 100; i++)
{
if (!nonZeroBinValues.ContainsKey(i))
{
Assert.Equal(0, intBins.GetHit(i));
}
}
foreach (var bin in nonZeroBinValues)
{
Assert.Equal(bin.Value, intBins.GetHit(bin.Key));
}
}
public void Merge(IBins <int> otherBins, int binOffset, int startBinInOther, int endBinInOther)
{
var startBinInThis = startBinInOther - binOffset;
var endBinInThis = Math.Min(_numBins, endBinInOther - binOffset);
for (int i = startBinInThis; i <= endBinInThis; i++)
{
var binIdInOtherBins = i + binOffset;
// Note, this keeps checking even if we've gone past the range of the other guy
var otherHit = otherBins.GetHit(binIdInOtherBins, false);
if (otherHit > 0)
{
IncrementHit(i, otherHit);
}
}
}
/// <summary>
/// Increment the hits of this bin with the hits from otherBins. Assumes they are on the same scale,
/// and will not go past the current bins. If offset not provided, also assumes start positions are the same.
/// </summary>
/// <param name="otherBins"></param>
/// <param name="binOffset"></param>
public void Merge(IBins <T> otherBins, int binOffset, int startBinInOther, int endBinInOther)
{
var defaultResult = ReturnDefault();
var startBinInThis = startBinInOther - binOffset;
var endBinInThis = Math.Min(_numBins, endBinInOther - binOffset);
for (int i = startBinInThis; i <= endBinInThis; i++)
{
var binIndexInOther = i + binOffset;
// Note, this keeps checking even if we've gone past the range of the other guy
var otherHit = otherBins.GetHit(binIndexInOther);
if (!otherHit.Equals(defaultResult))
{
MergeHits(i, otherHit);
}
}
}
public int GetAllHits(int i)
{
return(AllHits.GetHit(i));
}
public int GetMapqMessyHit(int i)
{
return(_mapqMessyHits.GetHit(i));
}
public int GetIndelHit(int i)
{
return(_indelHits.GetHit(i));
}
public int GetReverseMessyRegionHit(int i)
{
return(_revOnlyMessyHits.GetHit(i));
}
public int GetForwardMessyRegionHit(int i)
{
return(_fwdOnlyMessyHits.GetHit(i));
}
private bool GetProbableSnvHit(int i)
{
return(_probableTrueSnvRegions.GetHit(i));
}
public bool GetIsMessyEnough(int i)
{
return(_isMessyEnough.GetHit(i));
}
public bool GetIndelRegionHit(int i)
{
return(_indelRegions.GetHit(i));
}
public bool GetMapqMessyStatus(int i)
{
return(_mapqMessyStatus.GetHit(i));
}
public bool GetRevMessyStatus(int i)
{
return(_revMessyStatus.GetHit(i));
}
public bool GetFwdMessyStatus(int i)
{
return(_fwdMessyStatus.GetHit(i));
}
public bool IsPositionUsable(int position)
{
return(_sitesUsable.GetHit(_binConclusions.GetBinId(position)));
}
