protected ParsedIntervals <I, S> Parse(string sourceFilePath, ParsedIntervals <I, S> data)
{
_sourceFilePath = sourceFilePath;
_data = data;
_data.FilePath = Path.GetFullPath(_sourceFilePath);
_data.FileName = Path.GetFileName(_sourceFilePath);
_data.FileHashKey = HashFunctions.FNVHashFunction(_data.FilePath);
_excessChrs = new List <string>();
_missingChrs = new List <string>();
Messages = new List <string>();
_assemblyData = References.GetGenomeSizes(Assembly);
if (!File.Exists(_sourceFilePath))
{
throw new FileNotFoundException(string.Format("The file `{0}` does not exist or is inaccessible.", _sourceFilePath));
}
Parse();
if (_dropedLinesCount > 0)
{
Messages.Insert(0, "\t" + _dropedLinesCount.ToString() + " Lines dropped");
}
_data.Messages = Messages;
if (Assembly != Assemblies.Unknown)
{
ReadMissingAndExcessChrs();
}
_data.Assembly = Assembly;
return(_data);
}
public Interval(int left, int right, string hashSeed = "")
{
Left = left;
Right = right;
unchecked
{
_hashKey = (int)HashFunctions.FNVHashFunction(left.ToString() + right.ToString() + hashSeed);
}
}