private void createHD5DataObject(H5GroupId h5GroupId, string pathName, ref HD5DataSetObject dataObject)
{
H5DataSetId datasetid = null;
H5DataSpaceId spaceid = null;
H5DataTypeId dataTypeid = null;
try
{
dataObject.GroupId = h5GroupId;
datasetid = H5D.open(h5GroupId, pathName);
dataObject.DatasetID = datasetid;
dataObject.DatasetName = pathName;
spaceid = H5D.getSpace(datasetid);
var dims = H5S.getSimpleExtentDims(spaceid);
dataTypeid = H5D.getType(datasetid);
dataObject.Dim = dims.Length;
HDF5DotNet.H5T.H5TClass classType = H5T.getClass(dataTypeid);
int size = H5T.getSize(dataTypeid);
H5T.Sign sign = H5T.Sign.TWOS_COMPLEMENT;
if (classType == H5T.H5TClass.INTEGER)
{
sign = H5T.getSign(dataTypeid);
}
//var rank = H5S.getSimpleExtentNDims(space);
//var statu = H5S.getSimpleExtentDims(space);
Boolean bString = H5T.isVariableString(dataTypeid);
//String name = H5T.getMemberName(dataType, 0);
// var type2 = H5T.getNativeType(dataType, H5T.Direction.DEFAULT);
Type type = getTypeof(classType, size, sign);
dataObject.DataType = type;
dataObject.Data = readData(dataObject);
}
catch (Exception e)
{
Console.WriteLine(e.Message);
}
finally{
if (datasetid != null)
{
H5D.close(datasetid);
}
if (spaceid != null)
{
H5S.close(spaceid);
}
if (dataTypeid != null)
{
H5T.close(dataTypeid);
}
}
}
/// <summary>
/// 得到指定属性集合中指定属性名的属性值，未对异常进行处理
/// </summary>
/// <param name="obj"></param>
/// <param name="attributeName"></param>
/// <returns></returns>
private String getAttributeValue(H5ObjectWithAttributes obj, String attributeName)
{
H5AttributeId attId = null;
attId = H5A.open(obj, attributeName);
if (attId == null)
{
return(null);
}
H5DataTypeId typeId = null;
H5DataTypeId dtId = null;
H5AttributeInfo attInfo = null;
H5DataSpaceId spaceId = null;
object attributeVal = null;
typeId = H5A.getType(attId);
attInfo = H5A.getInfo(attId);
dtId = H5A.getType(attId);
spaceId = H5A.getSpace(attId);
int dataSize = H5T.getSize(dtId);
typeId = H5T.getNativeType(typeId, H5T.Direction.DEFAULT);
H5T.H5TClass typeClass = H5T.getClass(typeId);
long[] dims = H5S.getSimpleExtentDims(spaceId);
if (dims.Length == 0)
{
dims = new long[1];
dims[0] = 1;
}
switch (typeClass)
{
case H5T.H5TClass.STRING:
long size = attInfo.dataSize;
byte[] chars = readAttribute <byte>(size, attId, typeId);
attributeVal = Encoding.ASCII.GetString(chars);
break;
case H5T.H5TClass.INTEGER:
H5T.Sign sign = H5T.Sign.TWOS_COMPLEMENT;
sign = H5T.getSign(typeId);
switch (dataSize)
{
case 1:
attributeVal = readAttribute <byte>(dims[0], attId, typeId);
break;
case 2:
switch (sign)
{
case H5T.Sign.TWOS_COMPLEMENT:
attributeVal = readAttribute <Int16>(dims[0], attId, typeId);
break;
case H5T.Sign.UNSIGNED:
attributeVal = readAttribute <UInt16>(dims[0], attId, typeId);
break;
}
break;
case 4:
switch (sign)
{
case H5T.Sign.TWOS_COMPLEMENT:
attributeVal = readAttribute <Int32>(dims[0], attId, typeId);
break;
case H5T.Sign.UNSIGNED:
attributeVal = readAttribute <UInt32>(dims[0], attId, typeId);
break;
}
break;
case 8:
switch (sign)
{
case H5T.Sign.TWOS_COMPLEMENT:
attributeVal = readAttribute <Int64>(dims[0], attId, typeId);
break;
case H5T.Sign.UNSIGNED:
attributeVal = readAttribute <UInt64>(dims[0], attId, typeId);
break;
}
break;
}
break;
case H5T.H5TClass.FLOAT:
switch (dataSize)
{
case 4:
attributeVal = readAttribute <float>(dims[0], attId, typeId);
break;
case 8:
attributeVal = readAttribute <double>(dims[0], attId, typeId);
break;
}
break;
}
if (spaceId != null)
{
H5S.close(spaceId);
}
if (attId != null)
{
H5A.close(attId);
}
if (typeId != null)
{
H5T.close(typeId);
}
if (dtId != null)
{
H5T.close(dtId);
}
return(arrayToString(attributeVal));
}
//private string ArrayToString<T>(T[] v)
//{
// StringBuilder sb = new StringBuilder();
// //sb.Append("[");
// foreach (T t in v)
// {
// sb.Append(t.ToString());
// sb.Append(",");
// }
// if (sb.Length > 1)
// sb.Remove(sb.Length - 1, 1);
// //sb.Append("]");
// return sb.ToString();
//}
private object GetAttributeValue(H5ObjectWithAttributes obj, string attributeName)
{
H5AttributeId attId = null;
attId = H5A.open(obj, attributeName);
if (attId == null)
{
return(null);
}
H5DataTypeId typeId = null;
H5DataTypeId dtId = null;
H5AttributeInfo attInfo = null;
H5DataSpaceId spaceId = null;
H5DataTypeId oldTypeId = null;
object retObject = null;
try
{
typeId = H5A.getType(attId);
attInfo = H5A.getInfo(attId);
dtId = H5A.getType(attId);
spaceId = H5A.getSpace(attId);
int dataSize = H5T.getSize(dtId);
//
oldTypeId = typeId;
typeId = H5T.getNativeType(typeId, H5T.Direction.DEFAULT);
H5T.H5TClass typeClass = H5T.getClass(typeId);
long[] dims = H5S.getSimpleExtentDims(spaceId);
long dimSize = 1;
if (dims.Length == 0)
{
dimSize = 1;
}
else
{
foreach (long dim in dims)
{
dimSize *= dim;
}
}
switch (typeClass)
{
case H5T.H5TClass.STRING:
long size = attInfo.dataSize;
byte[] chars = ReadArray <byte>(size, attId, typeId);
retObject = Encoding.ASCII.GetString(chars);
break;
case H5T.H5TClass.INTEGER:
H5T.Sign sign = H5T.Sign.TWOS_COMPLEMENT;
sign = H5T.getSign(oldTypeId);
switch (dataSize)
{
case 1:
retObject = ReadArray <byte>(dimSize, attId, typeId);
break;
case 2:
switch (sign)
{
case H5T.Sign.TWOS_COMPLEMENT:
retObject = ReadArray <Int16>(dimSize, attId, typeId);
break;
case H5T.Sign.UNSIGNED:
retObject = ReadArray <UInt16>(dimSize, attId, typeId);
break;
}
break;
case 4:
switch (sign)
{
case H5T.Sign.TWOS_COMPLEMENT:
retObject = ReadArray <Int32>(dimSize, attId, typeId);
break;
case H5T.Sign.UNSIGNED:
retObject = ReadArray <UInt32>(dimSize, attId, typeId);
break;
}
break;
case 8:
switch (sign)
{
case H5T.Sign.TWOS_COMPLEMENT:
retObject = ReadArray <Int64>(dimSize, attId, typeId);
break;
case H5T.Sign.UNSIGNED:
retObject = ReadArray <UInt64>(dimSize, attId, typeId);
break;
}
break;
}
break;
case H5T.H5TClass.FLOAT:
switch (dataSize)
{
case 4:
retObject = ReadArray <float>(dimSize, attId, typeId);
break;
case 8:
retObject = ReadArray <double>(dimSize, attId, typeId);
break;
}
break;
}
return(retObject);
}
finally
{
if (spaceId != null)
{
H5S.close(spaceId);
}
if (attId != null)
{
H5A.close(attId);
}
if (oldTypeId != null)
{
H5T.close(oldTypeId);
}
if (typeId != null)
{
H5T.close(typeId);
}
if (dtId != null)
{
H5T.close(dtId);
}
}
}
private void ReadOldDataSetData(string dataSetName, int bandIndex, out int bandWidth, out int bandHeight, out enumDataType dataType, out object retObject)
{
bandHeight = bandWidth = 0;
dataType = enumDataType.UInt16;
retObject = null;
H5FileId _h5FileId = null;
H5DataSpaceId spaceid = null;
H5DataSetId dataSetId = null;
try
{
_h5FileId = H5F.open(fileName, H5F.OpenMode.ACC_RDONLY);
//先找出含有指定波段的数据集
dataSetId = H5D.open(_h5FileId, dataSetName);
spaceid = H5D.getSpace(dataSetId);
long[] dims = H5S.getSimpleExtentDims(spaceid); //得到数据数组的大小，比如[3,1800,2048]
int rank = H5S.getSimpleExtentNDims(spaceid); //得到数据数组的维数，比如3
int size = 0;
if (rank == 1)
{
bandHeight = bandWidth = 1;
size = bandWidth * bandHeight * rank;
}
else if (rank == 2)
{
bandWidth = Convert.ToInt32(dims[0]);
bandHeight = Convert.ToInt32(dims[1]);
size = bandWidth * bandHeight;
}
else if (rank == 3)
{
List <long> r = dims.ToList <long>();
r.Sort();
long[] temp = r.ToArray();
bandWidth = Convert.ToInt32(temp[1]);
bandHeight = Convert.ToInt32(temp[2]);
size = bandWidth * bandHeight * Convert.ToInt32(temp[0]);
}
int outSize = bandWidth * bandHeight;
H5DataTypeId typeId = H5D.getType(dataSetId);
H5T.H5TClass typeClass = H5T.getClass(typeId);//得到数据集的类型
int dataSize = H5T.getSize(typeId);
H5DataTypeId newTypeId = null;
switch (typeClass)
{
case H5T.H5TClass.INTEGER:
H5T.Sign sign = H5T.Sign.TWOS_COMPLEMENT;
sign = H5T.getSign(typeId);
switch (dataSize)
{
case 1:
newTypeId = H5T.copy(H5T.H5Type.NATIVE_B8);
retObject = ReadArray <byte>(size, dataSetId, newTypeId, bandIndex, outSize);
dataType = enumDataType.Byte;
break;
case 2:
switch (sign)
{
case H5T.Sign.TWOS_COMPLEMENT:
newTypeId = H5T.copy(H5T.H5Type.NATIVE_SHORT);
retObject = ReadArray <Int16>(size, dataSetId, newTypeId, bandIndex, outSize);
dataType = enumDataType.Int16;
break;
case H5T.Sign.UNSIGNED:
newTypeId = H5T.copy(H5T.H5Type.NATIVE_USHORT);
retObject = ReadArray <UInt16>(size, dataSetId, newTypeId, bandIndex, outSize);
dataType = enumDataType.UInt16;
break;
}
break;
case 4:
switch (sign)
{
case H5T.Sign.TWOS_COMPLEMENT:
newTypeId = H5T.copy(H5T.H5Type.NATIVE_INT);
retObject = ReadArray <Int32>(size, dataSetId, newTypeId, bandIndex, outSize);
dataType = enumDataType.Int32;
break;
case H5T.Sign.UNSIGNED:
newTypeId = H5T.copy(H5T.H5Type.NATIVE_UINT);
retObject = ReadArray <UInt32>(size, dataSetId, newTypeId, bandIndex, outSize);
dataType = enumDataType.UInt32;
break;
}
break;
case 8:
switch (sign)
{
case H5T.Sign.TWOS_COMPLEMENT:
newTypeId = H5T.copy(H5T.H5Type.NATIVE_LONG);
retObject = ReadArray <Int64>(size, dataSetId, newTypeId, bandIndex, outSize);
dataType = enumDataType.Int64;
break;
case H5T.Sign.UNSIGNED:
newTypeId = H5T.copy(H5T.H5Type.NATIVE_ULONG);
retObject = ReadArray <UInt64>(size, dataSetId, newTypeId, bandIndex, outSize);
dataType = enumDataType.UInt64;
break;
}
break;
}
break;
case H5T.H5TClass.FLOAT:
switch (dataSize)
{
case 4:
newTypeId = H5T.copy(H5T.H5Type.NATIVE_FLOAT);
retObject = ReadArray <float>(size, dataSetId, newTypeId, bandIndex, outSize);
dataType = enumDataType.Float;
break;
case 8:
newTypeId = H5T.copy(H5T.H5Type.NATIVE_DOUBLE);
retObject = ReadArray <double>(size, dataSetId, newTypeId, bandIndex, outSize);
dataType = enumDataType.Double;
break;
}
break;
}
}
finally
{
H5S.close(spaceid);
H5D.close(dataSetId);
H5F.close(_h5FileId);
}
}
/// <summary>
/// this still need to improve later.
/// </summary>
/// <param name="classType"></param>
/// <param name="size"></param>
/// <param name="sign"></param>
/// <returns></returns>
private Type getTypeof(H5T.H5TClass classType, int size, H5T.Sign sign)
{
if (sign == H5T.Sign.UNSIGNED)
{
if (classType == H5T.H5TClass.INTEGER)
{
if (size == 2)
{
return(typeof(UInt16));
}
else if (size == 4)
{
return(typeof(UInt32));
}
else if (size == 8)
{
return(typeof(UInt64));
}
}
// remain the same
if (classType == H5T.H5TClass.FLOAT)
{
if (size == 4)
{
return(typeof(float));
}
else if (size == 8)
{
return(typeof(double));
}
}
}
else
{
if (classType == H5T.H5TClass.INTEGER)
{
if (size == 2)
{
return(typeof(Int16));
}
else if (size == 4)
{
return(typeof(Int32));
}
else if (size == 8)
{
return(typeof(Int64));
}
}
if (classType == H5T.H5TClass.FLOAT)
{
if (size == 4)
{
return(typeof(float));
}
else if (size == 8)
{
return(typeof(double));
}
}
if (classType == H5T.H5TClass.STRING)
{
return(typeof(String));
}
if (classType == H5T.H5TClass.ENUM)
{
return(typeof(Enum));
}
if (classType == H5T.H5TClass.BITFIELD)
{
return(typeof(Boolean));
}
if (classType == H5T.H5TClass.ARRAY)
{
return(typeof(Array));
}
if (classType == H5T.H5TClass.COMPOUND)
{
return(typeof(Object));
}
}
return(null);
}
} // test_vlen_dtype
static void test_copy()
{
try
{
Console.Write("Testing copying datatypes");
// Make a copy of a predefined type.
H5DataTypeId inttype = H5T.copy(H5T.H5Type.NATIVE_INT);
int intsize = H5T.getSize(inttype);
// Make a copy of that type.
H5DataTypeId tcopy1 = H5T.copy(inttype);
int tcopy1_size = H5T.getSize(tcopy1);
// The sizes of the copies should be the same.
if (intsize != tcopy1_size)
{
Console.WriteLine("test_copy: copy types incorrectly");
nerrors++;
}
// Close second type
H5T.close(tcopy1);
/*
* Test copy a datatype from a dataset.
*/
// Create a new file.
H5FileId fileId = H5F.create("sometypes.h5", H5F.CreateMode.ACC_TRUNC);
// Create a dataset with a simple dataspace.
hssize_t[] dims = { DIM0, DIM1 };
H5DataSpaceId dspace = H5S.create_simple(2, dims);
H5DataSetId dset = H5D.create(fileId, "test_types", inttype, dspace);
// Obtain the datatype from the dataset.
H5DataTypeId dstype = H5T.copy(dset);
// Check this datatype's class, size, and sign.
H5T.H5TClass tclass = H5T.getClass(dstype);
if (tclass != H5T.H5TClass.INTEGER)
{
Console.WriteLine("test_copy: copy of dataset's datatype has incorrect class");
nerrors++;
}
int tsize = H5T.getSize(dstype);
if (tsize != intsize)
{
Console.WriteLine("test_copy: copy of dataset's datatype has incorrect size");
nerrors++;
}
H5T.Sign tsign = H5T.getSign(dstype);
if (tsign != H5T.Sign.TWOS_COMPLEMENT)
{
Console.WriteLine("test_copy: copy of dataset's datatype has incorrect sign, {0}", tsign);
nerrors++;
}
// Close objects.
H5T.close(inttype);
H5S.close(dspace);
H5T.close(dstype);
H5D.close(dset);
H5F.close(fileId);
Console.WriteLine("\t\t\t\tPASSED");
}
catch (HDFException anyHDF5E)
{
Console.WriteLine(anyHDF5E.Message);
nerrors++;
}
catch (System.Exception sysE)
{
Console.WriteLine(sysE.TargetSite);
Console.WriteLine(sysE.Message);
nerrors++;
}
} // test_copy
