public List <string> Generate(string sequence)
{
List <string> peptideList = new List <string>();
foreach (string s in generator.Generate(sequence))
{
if (FindPTMPosition.ContainsOGlycanSite(s))
{
peptideList.Add(s);
}
}
return(peptideList);
}
public List <IPeptide> Create(IProtein protein)
{
List <string> pepList = new List <string>();
foreach (string sequence in creator.GeneratePeptideSequences(protein))
{
if (FindPTMPosition.ContainsOGlycanSite(sequence))
{
pepList.Add(sequence);
}
}
List <IPeptide> peptideList = creator.CreateNewPeptides(protein.GetID(), pepList);
protein.SetPeptides(peptideList);
return(peptideList);
}