public async Task InitializeAsync()
{
// Create various resources.
Device = await FhirClient.CreateAsync(Samples.GetJsonSample <Device>("Device-d1"));
Patient = await FhirClient.CreateAsync(Samples.GetJsonSample <Patient>("Patient-f001"));
string patientReference = $"Patient/{Patient.Id}";
Observation observationToCreate = Samples.GetJsonSample <Observation>("Observation-For-Patient-f001");
observationToCreate.Subject.Reference = patientReference;
observationToCreate.Device = new ResourceReference($"Device/{Device.Id}");
Observation = await FhirClient.CreateAsync(observationToCreate);
Encounter encounterToCreate = Samples.GetJsonSample <Encounter>("Encounter-For-Patient-f001");
encounterToCreate.Subject.Reference = patientReference;
Encounter = await FhirClient.CreateAsync(encounterToCreate);
Condition conditionToCreate = Samples.GetJsonSample <Condition>("Condition-For-Patient-f001");
conditionToCreate.Subject.Reference = patientReference;
Condition = await FhirClient.CreateAsync(conditionToCreate);
}
public ClassFixture(DataStore dataStore, Format format)
: base(dataStore, format)
{
Tag = Guid.NewGuid().ToString();
// Construct an observation pointing to a patient and a diagnostic report pointing to the observation and the patient
Patient smithPatient = FhirClient.CreateAsync(new Patient {
Name = new List <HumanName> {
new HumanName {
Family = "Smith"
}
}
}).Result.Resource;
Patient trumanPatient = FhirClient.CreateAsync(new Patient {
Name = new List <HumanName> {
new HumanName {
Family = "Truman"
}
}
}).Result.Resource;
var smithObservation = CreateObservation(smithPatient);
var trumanObservation = CreateObservation(trumanPatient);
SmithDiagnosticReport = CreateDiagnosticReport(smithPatient, smithObservation);
TrumanDiagnosticReport = CreateDiagnosticReport(trumanPatient, trumanObservation);
DiagnosticReport CreateDiagnosticReport(Patient patient, Observation observation)
{
return(FhirClient.CreateAsync(
new DiagnosticReport
{
Meta = new Meta {
Tag = new List <Coding> {
new Coding("testTag", Tag)
}
},
Status = DiagnosticReport.DiagnosticReportStatus.Final,
Code = new CodeableConcept("http://snomed.info/sct", "429858000"),
Subject = new ResourceReference($"Patient/{patient.Id}"),
Result = new List <ResourceReference> {
new ResourceReference($"Observation/{observation.Id}")
},
}).Result.Resource);
}
Observation CreateObservation(Patient patient)
{
return(FhirClient.CreateAsync(
new Observation()
{
Status = ObservationStatus.Final,
Code = new CodeableConcept("http://snomed.info/sct", "429858000"),
Subject = new ResourceReference($"Patient/{patient.Id}"),
}).Result.Resource);
}
}
public async Task GivenAResource_WhenCreated_ThenCorrectNumberOfMetricNotificationsShouldBeEmitted()
{
_metricHandler?.ResetCount();
await ExecuteAndValidate(
() => _client.CreateAsync(Samples.GetDefaultObservation().ToPoco()),
(type : typeof(ApiResponseNotification), count : 1),
(type : typeof(CosmosStorageRequestMetricsNotification), count : 1));
}
protected static async Task <TResource> CreateResourceByIdentityAsync <TResource>(FhirClient client, Model.Identifier identifier, Action <TResource, Model.Identifier> propertySetter)
where TResource : Model.Resource, new()
{
EnsureArg.IsNotNull(client, nameof(client));
EnsureArg.IsNotNull(identifier, nameof(identifier));
var resource = new TResource();
propertySetter?.Invoke(resource, identifier);
return(await client.CreateAsync <TResource>(resource).ConfigureAwait(false));
}
/// <summary>
/// Create a new Patint
/// </summary>
/// <param name="patient"></param>
/// <returns>New Patient</returns>
public async Task <Patient> CreatePatientAsync(PatientDto patient)
{
Patient result = null;
var newPatient = _patientDtoToPatientConverter.Convert(patient);
// Before adding the patient to the server, let's validate it first
bool success = ValidatePatient(newPatient);
if (success)
{
result = await _fhirClient.CreateAsync(newPatient).ConfigureAwait(false);
}
return(result);
}
public virtual async Task <string> SaveObservationAsync(ILookupTemplate <IFhirTemplate> config, IObservationGroup observationGroup, IDictionary <ResourceType, string> ids)
{
var identifier = GenerateObservationIdentifier(observationGroup, ids);
var cacheKey = $"{identifier.System}|{identifier.Value}";
if (!_observationCache.TryGetValue(cacheKey, out Model.Observation existingObservation))
{
existingObservation = await GetObservationFromServerAsync(identifier).ConfigureAwait(false);
}
Model.Observation result;
if (existingObservation == null)
{
var newObservation = GenerateObservation(config, observationGroup, identifier, ids);
result = await _client.CreateAsync(newObservation).ConfigureAwait(false);
_logger.LogMetric(IomtMetrics.FhirResourceSaved(ResourceType.Observation, ResourceOperation.Created), 1);
}
else
{
var policyResult = await Policy <Model.Observation>
.Handle <FhirOperationException>(ex => ex.Status == System.Net.HttpStatusCode.Conflict || ex.Status == System.Net.HttpStatusCode.PreconditionFailed)
.RetryAsync(2, async(polyRes, attempt) =>
{
existingObservation = await GetObservationFromServerAsync(identifier).ConfigureAwait(false);
})
.ExecuteAndCaptureAsync(async() =>
{
var mergedObservation = MergeObservation(config, existingObservation, observationGroup);
return(await _client.UpdateAsync(mergedObservation, versionAware: true).ConfigureAwait(false));
}).ConfigureAwait(false);
var exception = policyResult.FinalException;
if (exception != null)
{
throw exception;
}
result = policyResult.Result;
_logger.LogMetric(IomtMetrics.FhirResourceSaved(ResourceType.Observation, ResourceOperation.Updated), 1);
}
_observationCache.CreateEntry(cacheKey)
.SetAbsoluteExpiration(DateTimeOffset.UtcNow.AddHours(1))
.SetSize(1)
.SetValue(result)
.Dispose();
return(result.Id);
}
public void PatientCreationUpdateDeletion()
{
Patient patient = null !;
"When creating a patient resource".x(
async() => patient = await _client.CreateAsync(
new Patient
{
Active = true,
Name =
{
new HumanName
{
Family = "Tester", Given = new[]{ "Anne" }, Use = HumanName.NameUse.Usual
}
}
}).ConfigureAwait(false));
"Then patient has id".x(() => Assert.NotNull(patient.Id));
"And patient can be updated".x(
async() =>
{
patient.BirthDateElement = new Date(1970, 1, 1);
patient = await _client.UpdateAsync(patient).ConfigureAwait(false);
Assert.NotNull(patient.BirthDate);
});
"and can be found when searched".x(
async() =>
{
var p = await _client.SearchByIdAsync <Patient>(patient.Id).ConfigureAwait(false);
Assert.NotEmpty(p.GetResources());
});
"When patient can be deleted".x(
async() =>
{
await _client.DeleteAsync(patient).ConfigureAwait(false);
});
"Then cannot be found".x(
async() =>
{
var p = await _client.SearchByIdAsync <Patient>(patient.Id).ConfigureAwait(false);
Assert.Empty(p.GetResources());
});
}
public async Task <string> AddPatientAsync(PatientCreateRequest patient)
{
try
{
var newpa = new Hl7.Fhir.Model.Patient()
{
Active = true,
BirthDate = patient.DateOfBirth?.ToString("yyyy-MM-dd", System.Globalization.CultureInfo.InvariantCulture),
Gender = patient.Gender.ToLower() == "female" ? AdministrativeGender.Female : AdministrativeGender.Male,
Name = new List <HumanName>()
{
new HumanName()
{
Use = HumanName.NameUse.Usual,
Text = patient.Firstname + patient.Lastname,
Family = patient.Lastname,
Given = new List <string>()
{
patient.Firstname
}
}
},
Telecom = new List <ContactPoint>()
{
new ContactPoint()
{
Use = ContactPoint.ContactPointUse.Mobile,
Rank = 1,
Value = patient.PhoneNumber
}
}
};
var fhirClient = new FhirClient("http://hapi.fhir.org/baseDstu3");
var result = await fhirClient.CreateAsync <Hl7.Fhir.Model.Patient>(newpa);
return(result.Id);
}
catch (Exception ex)
{
return(null);
}
}
public async Task <string> AddMedicinesToPatientAsync(string emrPatientId, List <MedicationEntity> medicineList)
{
// emrPatientId = "1795445";
if (medicineList == null)
{
return(null);
}
if (string.IsNullOrEmpty(emrPatientId))
{
throw new Exception("EMR Patient Id is invalid or not found.");
}
try
{
var patientMedicine = new MedicationRequest
{
Status = MedicationRequestStatus.Active,
Intent = MedicationRequestIntent.Order,
Subject = new ResourceReference
{
Reference = $"Patient/{emrPatientId}",
},
Category = new CodeableConcept
{
Coding = GetMedicineNames(medicineList)
},
DosageInstruction = GetDosageInstructions(medicineList)
};
var fhirClient = new FhirClient("http://hapi.fhir.org/baseDstu3");
var result = await fhirClient.CreateAsync <MedicationRequest>(patientMedicine);
return(result.Id);
}
catch (System.Exception ex)
{
throw;
}
}
public async Task <OrganizationCreationResponse> CreateAsync(OrganizationForCreation org)
{
var Result = new OrganizationCreationResponse {
Data = new NewOrganization()
};
Organization organization = new Organization
{
Name = org.name,
Address = GetFHIROrgAddresses(org),
Telecom = GetFHIROrgTelecoms(org),
Type = GetFHIROrgType(org)
};
Organization FHIROrganization = await _client.CreateAsync(organization).ConfigureAwait(false);
Result.Data.OrganizationId = FHIROrganization.Id;//1ce02b5e-a9ae-4f4a-a2b9-cc0a8d4c987b
return(Result);
}
public async Task <IActionResult> CreatePractitionerAsync(CustomPractitioner customPractitioner)
{
Practitioner practitioner = new Practitioner();
practitioner.Identifier.Add(new Identifier("UptSystem", "UPTValue"));
practitioner.Name.Add(new HumanName()
{
Given = customPractitioner.FirstNames,
Family = customPractitioner.Name
});
var response = await _client.CreateAsync(practitioner);
if (response == null)
{
return(BadRequest("Object sent was not correct!"));
}
return(Created($"{BASEURL}/Practitioner/{response.Id}", "Created with succes!"));
}
public async Task <string> AddPatientConditions(string emrPatientId, MedicalConditionRequest MedicalRequestModel
)
{
//List<MedicalConditionEntity> medicalConditionList, List<AnatomyEntity> anatomyList
if (string.IsNullOrEmpty(emrPatientId))
{
throw new Exception("EMR Patient Id is invalid or not found.");
}
try
{
var request = new Condition
{
ClinicalStatus = Condition.ConditionClinicalStatusCodes.Active,
VerificationStatus = Condition.ConditionVerificationStatus.Confirmed,
Subject = new ResourceReference
{
Reference = $"Patient/{emrPatientId}",
},
};
List <MedicalConditionEntity> medicalConditionList = MedicalRequestModel.MedicalConditions;
List <AnatomyEntity> anatomyList = MedicalRequestModel.Anatomies;
request.Category = GetCategories(medicalConditionList);
request.Severity = GetSeverityList(medicalConditionList);
request.Code = GetProblems(medicalConditionList);
request.BodySite = GetBodySites(anatomyList);
var fhirClient = new FhirClient("http://hapi.fhir.org/baseDstu3");
var result = await fhirClient.CreateAsync <Condition>(request);
return(result.Id);
}
catch (Exception)
{
throw;
}
}
public void CreateEditDeleteAsync()
{
var furore = new Organization
{
Name = "Furore",
Identifier = new List<Identifier> { new Identifier("http://hl7.org/test/1", "3141") },
Telecom = new List<Contact> { new Contact { System = Contact.ContactSystem.Phone, Value = "+31-20-3467171" } }
};
FhirClient client = new FhirClient(testEndpoint);
var tags = new List<Tag> { new Tag("http://nu.nl/testname", Tag.FHIRTAGSCHEME_GENERAL, "TestCreateEditDelete") };
var fe = client.CreateAsync<Organization>(furore, tags: tags, refresh: true).Result;
Assert.IsNotNull(furore);
Assert.IsNotNull(fe);
Assert.IsNotNull(fe.Id);
Assert.IsNotNull(fe.SelfLink);
Assert.AreNotEqual(fe.Id, fe.SelfLink);
Assert.IsNotNull(fe.Tags);
Assert.AreEqual(1, fe.Tags.Count(), "Tag count on new organization record don't match");
Assert.AreEqual(fe.Tags.First(), tags[0]);
createdTestOrganizationUrl = fe.Id;
fe.Resource.Identifier.Add(new Identifier("http://hl7.org/test/2", "3141592"));
var fe2 = client.UpdateAsync(fe, refresh: true).Result;
Assert.IsNotNull(fe2);
Assert.AreEqual(fe.Id, fe2.Id);
Assert.AreNotEqual(fe.SelfLink, fe2.SelfLink);
Assert.AreEqual(2, fe2.Resource.Identifier.Count);
Assert.IsNotNull(fe2.Tags);
Assert.AreEqual(1, fe2.Tags.Count(), "Tag count on updated organization record don't match");
Assert.AreEqual(fe2.Tags.First(), tags[0]);
fe.Resource.Identifier.Add(new Identifier("http://hl7.org/test/3", "3141592"));
var fe3 = client.UpdateAsync(fe2.Id, fe.Resource, refresh: true).Result;
Assert.IsNotNull(fe3);
Assert.AreEqual(3, fe3.Resource.Identifier.Count);
client.DeleteAsync(fe3).Wait();
try
{
// Get most recent version
fe = client.ReadAsync<Organization>(new ResourceIdentity(fe.Id)).Result;
Assert.Fail();
}
catch
{
Assert.IsTrue(client.LastResponseDetails.Result == HttpStatusCode.Gone);
}
}
public void CreateEditDeleteAsync()
{
var furore = new Organization
{
Name = "Furore",
Identifier = new List <Identifier> {
new Identifier("http://hl7.org/test/1", "3141")
},
Telecom = new List <Contact> {
new Contact {
System = Contact.ContactSystem.Phone, Value = "+31-20-3467171"
}
}
};
FhirClient client = new FhirClient(testEndpoint);
var tags = new List <Tag> {
new Tag("http://nu.nl/testname", Tag.FHIRTAGSCHEME_GENERAL, "TestCreateEditDelete")
};
var fe = client.CreateAsync <Organization>(furore, tags: tags, refresh: true).Result;
Assert.IsNotNull(furore);
Assert.IsNotNull(fe);
Assert.IsNotNull(fe.Id);
Assert.IsNotNull(fe.SelfLink);
Assert.AreNotEqual(fe.Id, fe.SelfLink);
Assert.IsNotNull(fe.Tags);
Assert.AreEqual(1, fe.Tags.Count(), "Tag count on new organization record don't match");
Assert.AreEqual(fe.Tags.First(), tags[0]);
createdTestOrganizationUrl = fe.Id;
fe.Resource.Identifier.Add(new Identifier("http://hl7.org/test/2", "3141592"));
var fe2 = client.UpdateAsync(fe, refresh: true).Result;
Assert.IsNotNull(fe2);
Assert.AreEqual(fe.Id, fe2.Id);
Assert.AreNotEqual(fe.SelfLink, fe2.SelfLink);
Assert.AreEqual(2, fe2.Resource.Identifier.Count);
Assert.IsNotNull(fe2.Tags);
Assert.AreEqual(1, fe2.Tags.Count(), "Tag count on updated organization record don't match");
Assert.AreEqual(fe2.Tags.First(), tags[0]);
fe.Resource.Identifier.Add(new Identifier("http://hl7.org/test/3", "3141592"));
var fe3 = client.UpdateAsync(fe2.Id, fe.Resource, refresh: true).Result;
Assert.IsNotNull(fe3);
Assert.AreEqual(3, fe3.Resource.Identifier.Count);
client.DeleteAsync(fe3).Wait();
try
{
// Get most recent version
fe = client.ReadAsync <Organization>(new ResourceIdentity(fe.Id)).Result;
Assert.Fail();
}
catch
{
Assert.IsTrue(client.LastResponseDetails.Result == HttpStatusCode.Gone);
}
}
public ClassFixture(DataStore dataStore, Format format)
: base(dataStore, format)
{
Tag = Guid.NewGuid().ToString();
// Construct an observation pointing to a patient and a diagnostic report pointing to the observation and the patient along with some not matching entries
var snomedCode = new CodeableConcept("http://snomed.info/sct", "429858000");
var loincCode = new CodeableConcept("http://loinc.org", "4548-4");
var meta = new Meta
{
Tag = new List <Coding>
{
new Coding("testTag", Tag),
},
};
var organization = FhirClient.CreateAsync(new Organization {
Meta = meta, Address = new List <Address> {
new Address {
City = "Seattle"
}
}
}).Result.Resource;
AdamsPatient = FhirClient.CreateAsync(new Patient {
Meta = meta, Name = new List <HumanName> {
new HumanName {
Family = "Adams"
}
}
}).Result.Resource;
SmithPatient = FhirClient.CreateAsync(new Patient {
Meta = meta, Name = new List <HumanName> {
new HumanName {
Family = "Smith"
}
}, ManagingOrganization = new ResourceReference($"Organization/{organization.Id}")
}).Result.Resource;
TrumanPatient = FhirClient.CreateAsync(new Patient {
Meta = meta, Name = new List <HumanName> {
new HumanName {
Family = "Truman"
}
}
}).Result.Resource;
var adamsLoincObservation = CreateObservation(AdamsPatient, loincCode);
var smithLoincObservation = CreateObservation(SmithPatient, loincCode);
var smithSnomedObservation = CreateObservation(SmithPatient, snomedCode);
var trumanLoincObservation = CreateObservation(TrumanPatient, loincCode);
var trumanSnomedObservation = CreateObservation(TrumanPatient, snomedCode);
SmithSnomedDiagnosticReport = CreateDiagnosticReport(SmithPatient, smithSnomedObservation, snomedCode);
TrumanSnomedDiagnosticReport = CreateDiagnosticReport(TrumanPatient, trumanSnomedObservation, snomedCode);
SmithLoincDiagnosticReport = CreateDiagnosticReport(SmithPatient, smithLoincObservation, loincCode);
TrumanLoincDiagnosticReport = CreateDiagnosticReport(TrumanPatient, trumanLoincObservation, loincCode);
var group = new Group
{
Meta = new Meta {
Tag = new List <Coding> {
new Coding("testTag", Tag)
}
},
Type = Group.GroupType.Person, Actual = true,
Member = new List <Group.MemberComponent>
{
new Group.MemberComponent {
Entity = new ResourceReference($"Patient/{AdamsPatient.Id}")
},
new Group.MemberComponent {
Entity = new ResourceReference($"Patient/{SmithPatient.Id}")
},
new Group.MemberComponent {
Entity = new ResourceReference($"Patient/{TrumanPatient.Id}")
},
},
};
PatientGroup = FhirClient.CreateAsync(group).Result.Resource;
DiagnosticReport CreateDiagnosticReport(Patient patient, Observation observation, CodeableConcept code)
{
return(FhirClient.CreateAsync(
new DiagnosticReport
{
Meta = meta,
Status = DiagnosticReport.DiagnosticReportStatus.Final,
Code = code,
Subject = new ResourceReference($"Patient/{patient.Id}"),
Result = new List <ResourceReference> {
new ResourceReference($"Observation/{observation.Id}")
},
}).Result.Resource);
}
Observation CreateObservation(Patient patient, CodeableConcept code)
{
return(FhirClient.CreateAsync(
new Observation()
{
Status = ObservationStatus.Final,
Code = code,
Subject = new ResourceReference($"Patient/{patient.Id}"),
}).Result.Resource);
}
}
public async Task <string> AddMedicinesToPatientAsyncTest()
{
try
{
var patientMedicine = new MedicationRequest
{
Status = MedicationRequestStatus.Active,
Intent = MedicationRequestIntent.Order,
Category = new CodeableConcept
{
Coding = new List <Coding>
{
new Coding
{
Code = "386864001",
Display = "amlodipine 5 mg oral tablet"
}
}
},
Subject = new ResourceReference
{
Reference = "Patient/1795445",
},
DosageInstruction = new List <Dosage>
{
new Dosage
{
Text = "50 mg = 2 tab(s), PO, qDay, # 10 tab(s), 2 Refill(s)",
Timing = new Timing
{
Repeat = new Timing.RepeatComponent
{
Frequency = 1,
Period = 1,
PeriodUnit = Timing.UnitsOfTime.D
}
},
Route = new CodeableConcept
{
Coding = new List <Coding>
{
new Coding
{
Display = "Oral"
}
}
},
MaxDosePerLifetime = new Quantity
{
Value = 5,
Unit = "mg",
System = "http://unitsofmeasure.org"
}
},
}
};
var fhirClient = new FhirClient("http://hapi.fhir.org/baseDstu3");
var result = await fhirClient.CreateAsync <MedicationRequest>(patientMedicine);
return(result.Id);
}
catch (System.Exception ex)
{
throw;
}
}
