public void TestDrugExposuresGap1()
{
var drugExposures = new List <DrugExposure>
{
new DrugExposure(new Entity
{
ConceptId = 1,
PersonId = 1,
StartDate = DateTime.Parse("2001-01-15"),
EndDate = DateTime.Parse("2001-02-15")
})
{
GetEraConceptIdsCall = GetEraConceptIds2
},
new DrugExposure(new Entity
{
ConceptId = 1,
PersonId = 1,
StartDate = DateTime.Parse("2001-02-25"),
EndDate = DateTime.Parse("2001-03-01")
})
{
GetEraConceptIdsCall = GetEraConceptIds2
}
};
var eras = EraHelper.GetEras(drugExposures, 30, 0).ToList();
Assert.AreEqual(eras.Count, 1);
Assert.AreEqual(eras[0].StartDate, DateTime.Parse("2001-01-15"));
Assert.AreEqual(eras[0].EndDate, DateTime.Parse("2001-03-01"));
Assert.AreEqual(eras[0].GapDays, 10);
Assert.AreEqual(eras[0].OccurrenceCount, 2);
}
public override IEnumerable <EraEntity> BuildConditionEra(ConditionOccurrence[] conditionOccurrences, ObservationPeriod[] observationPeriods)
{
foreach (var eraEntity in EraHelper.GetEras(conditionOccurrences, 30, 38000247))
{
eraEntity.Id = Offset.GetKeyOffset(eraEntity.PersonId).ConditionEraId;
yield return(eraEntity);
}
}
/// <summary>
/// A Drug Era is defined as a span of time when the Person is assumed to be exposed to a particular drug.
/// Successive periods of Drug Exposures are combined under certain rules to produce continuous Drug Eras.
/// The Drug Era is populated by pulling from the set of drug exposure. A drug era is therefore understood as exposure to a certain compound over a certain period of time.
/// There will only be one type of persistence window (duration that is allowed to elapse between drug exposures) applied to this CDM, which is 30 days.
/// </summary>
/// <param name="drugExposures">set of drug exposure entities</param>
/// <returns>Enumeration of drug era</returns>
public virtual IEnumerable <EraEntity> BuildDrugEra(DrugExposure[] drugExposures)
{
foreach (var eraEntity in EraHelper.GetEras(drugExposures.Where(d => string.IsNullOrEmpty(d.Domain) || d.Domain == "Drug"), 30, 38000182))
{
eraEntity.Id = chunkData.KeyMasterOffset.DrugEraId;
yield return(eraEntity);
}
}
/// <summary>
/// A Drug Era is defined as a span of time when the Person is assumed to be exposed to a particular drug.
/// Successive periods of Drug Exposures are combined under certain rules to produce continuous Drug Eras.
/// The Drug Era is populated by pulling from the set of drug exposure. A drug era is therefore understood as exposure to a certain compound over a certain period of time.
/// There will only be one type of persistence window (duration that is allowed to elapse between drug exposures) applied to this CDM, which is 30 days.
/// </summary>
/// <param name="drugExposures">set of drug exposure entities</param>
/// <param name="observationPeriods">the observation periods entities for current person</param>
/// <returns>Enumeration of drug era</returns>
public virtual IEnumerable <EraEntity> BuildDrugEra(DrugExposure[] drugExposures, ObservationPeriod[] observationPeriods)
{
foreach (var eraEntity in EraHelper.GetEras(
Clean(drugExposures, observationPeriods, true).Where(d => string.IsNullOrEmpty(d.Domain) || d.Domain == "Drug"), 30, 38000182))
{
eraEntity.Id = KeyMasterOffsetManager.GetKeyOffset(eraEntity.PersonId).DrugEraId;
yield return(eraEntity);
}
}
/// <summary>
/// CONDITION_ERAs are chronological periods of condition occurrence.
/// There will only be one type of persistence window (duration that is allowed to elapse between condition occurrences) applied to this CDM, which is 30 days.
/// CONDITION_END_DATE will be the CONDITION_START_DATE.
/// </summary>
/// <param name="conditionOccurrences">Set of condition occurrence entities</param>
/// <returns>Enumeration of condition era</returns>
public virtual IEnumerable <EraEntity> BuildConditionEra(ConditionOccurrence[] conditionOccurrences)
{
foreach (var eraEntity in EraHelper.GetEras(
conditionOccurrences.Where(c => string.IsNullOrEmpty(c.Domain) || c.Domain == "Condition"), 30, 38000247))
{
eraEntity.Id = chunkData.KeyMasterOffset.ConditionEraId;
yield return(eraEntity);
}
}
public override IEnumerable <EraEntity> BuildDrugEra(DrugExposure[] drugExposures, ObservationPeriod[] observationPeriods)
{
foreach (var eraEntity in EraHelper.GetEras(
Clean(drugExposures, observationPeriods, false), 30, 38000182))
{
eraEntity.Id = Offset.GetKeyOffset(eraEntity.PersonId).DrugEraId;
yield return(eraEntity);
}
}
/// <summary>
/// CONDITION_ERAs are chronological periods of condition occurrence.
/// There will only be one type of persistence window (duration that is allowed to elapse between condition occurrences) applied to this CDM, which is 30 days.
/// CONDITION_END_DATE will be the CONDITION_START_DATE.
/// </summary>
/// <param name="conditionOccurrences">Set of condition occurrence entities</param>
/// <param name="observationPeriods">the observation periods entities for current person</param>
/// <returns>Enumeration of condition era</returns>
public virtual IEnumerable <EraEntity> BuildConditionEra(ConditionOccurrence[] conditionOccurrences, ObservationPeriod[] observationPeriods)
{
foreach (var eraEntity in EraHelper.GetEras(
Clean(conditionOccurrences, observationPeriods, true).Where(c => string.IsNullOrEmpty(c.Domain) || c.Domain == "Condition"), 30,
38000247))
{
eraEntity.Id = KeyMasterOffsetManager.GetKeyOffset(eraEntity.PersonId).ConditionEraId;
yield return(eraEntity);
}
}
public void TestDrugExposures()
{
var drugExposures = new List <DrugExposure>
{
new DrugExposure(new Entity
{
ConceptId = 1,
PersonId = 1,
StartDate = new DateTime(2011, 3, 7)
})
{
Ingredients = new List <int> {
1, 2, 3
}
},
new DrugExposure(new Entity
{
ConceptId = 2,
PersonId = 1,
StartDate = new DateTime(2011, 3, 7)
})
{
Ingredients = new List <int> {
1
}
},
new DrugExposure(new Entity
{
ConceptId = 2,
PersonId = 1,
StartDate = new DateTime(2011, 3, 7)
})
{
Ingredients = new List <int> {
1, 2, 3, 4
}
}
};
var eras = EraHelper.GetEras(drugExposures, 0, 0).ToList();
Assert.AreEqual(eras.Count, 4);
Assert.AreEqual(eras[0].ConceptId, 1);
Assert.AreEqual(eras[0].OccurrenceCount, 3);
Assert.AreEqual(eras[1].ConceptId, 2);
Assert.AreEqual(eras[1].OccurrenceCount, 2);
Assert.AreEqual(eras[2].ConceptId, 3);
Assert.AreEqual(eras[2].OccurrenceCount, 2);
Assert.AreEqual(eras[3].ConceptId, 4);
Assert.AreEqual(eras[3].OccurrenceCount, 1);
}
public void TestDrugExposures3()
{
var drugExposures = new List <DrugExposure>
{
new DrugExposure(new Entity
{
ConceptId = 1,
PersonId = 1,
StartDate = DateTime.Parse("2001-01-15"),
EndDate = DateTime.Parse("2001-04-08")
})
{
Ingredients = new List <int> {
1
}
},
new DrugExposure(new Entity
{
ConceptId = 2,
PersonId = 1,
StartDate = DateTime.Parse("2001-01-17"),
EndDate = DateTime.Parse("2001-02-13")
})
{
Ingredients = new List <int> {
1
}
},
new DrugExposure(new Entity
{
ConceptId = 2,
PersonId = 1,
StartDate = DateTime.Parse("2001-04-09"),
EndDate = DateTime.Parse("2001-05-06")
})
{
Ingredients = new List <int> {
1
}
}
};
var eras = EraHelper.GetEras(drugExposures, 30, 0).ToList();
Assert.AreEqual(eras.Count, 1);
Assert.AreEqual(eras[0].StartDate, DateTime.Parse("2001-01-15"));
Assert.AreEqual(eras[0].EndDate, DateTime.Parse("2001-05-06"));
Assert.AreEqual(eras[0].OccurrenceCount, 3);
}
/// <summary>
/// A Drug Era is defined as a span of time when the Person is assumed to be exposed to a particular drug.
/// Successive periods of Drug Exposures are combined under certain rules to produce continuous Drug Eras.
/// The Drug Era is populated by pulling from the set of drug exposure. A drug era is therefore understood as exposure to a certain compound over a certain period of time.
/// There will only be one type of persistence window (duration that is allowed to elapse between drug exposures) applied to this CDM, which is 30 days.
/// </summary>
/// <param name="drugExposures">set of drug exposure entities</param>
/// <returns>Enumeration of drug era</returns>
public virtual IEnumerable <EraEntity> BuildDrugEra(DrugExposure[] drugExposures)
{
return(EraHelper.GetEras(drugExposures.ToList(), 30, 38000182));
}
/// <summary>
/// CONDITION_ERAs are chronological periods of condition occurrence.
/// There will only be one type of persistence window (duration that is allowed to elapse between condition occurrences) applied to this CDM, which is 30 days.
/// CONDITION_END_DATE will be the CONDITION_START_DATE.
/// </summary>
/// <param name="conditionOccurrences">Set of condition occurrence entities</param>
/// <returns>Enumeration of condition era</returns>
public virtual IEnumerable <EraEntity> BuildConditionEra(ConditionOccurrence[] conditionOccurrences)
{
return(EraHelper.GetEras(conditionOccurrences, 30, 38000247));
}