public async Task Retrieve_Study_BadTransferSyntax()
{
var studyUid = DicomUIDGenerator.GenerateDerivedFromUUID();
var response = new HttpResponseMessage
{
StatusCode = HttpStatusCode.OK,
Content = await _fixture.GenerateInstances(1, studyUid),
};
Mock <HttpMessageHandler> handlerMock;
HttpClient httpClient;
GenerateHttpClient(response, out handlerMock, out httpClient);
var wado = new WadoService(httpClient);
await Assert.ThrowsAsync <ArgumentException>(async() =>
{
await foreach (var instance in wado.Retrieve(studyUid.UID, DicomTransferSyntax.ImplicitVRLittleEndian))
{
}
});
}
public async Task RetrieveMetadata_Instance_BadUids()
{
var httpClient = new HttpClient();
var wado = new WadoService(httpClient, new Uri("http://dummy/api/"));
await Assert.ThrowsAsync <ArgumentNullException>(async() =>
{
await wado.RetrieveMetadata <string>(null, seriesInstanceUid: null, sopInstanceUid: null);
});
await Assert.ThrowsAsync <DicomValidationException>(async() =>
{
await wado.RetrieveMetadata <string>("bad uid", seriesInstanceUid: null, sopInstanceUid: null);
});
await Assert.ThrowsAsync <ArgumentNullException>(async() =>
{
await wado.RetrieveMetadata <string>(DicomUIDGenerator.GenerateDerivedFromUUID().UID, seriesInstanceUid: null, sopInstanceUid: null);
});
await Assert.ThrowsAsync <DicomValidationException>(async() =>
{
await wado.RetrieveMetadata <string>(DicomUIDGenerator.GenerateDerivedFromUUID().UID, seriesInstanceUid: "bad id", sopInstanceUid: "bad id");
});
await Assert.ThrowsAsync <ArgumentNullException>(async() =>
{
await wado.RetrieveMetadata <string>(DicomUIDGenerator.GenerateDerivedFromUUID().UID, seriesInstanceUid: DicomUIDGenerator.GenerateDerivedFromUUID().UID, sopInstanceUid: null);
});
await Assert.ThrowsAsync <DicomValidationException>(async() =>
{
await wado.RetrieveMetadata <string>(DicomUIDGenerator.GenerateDerivedFromUUID().UID, seriesInstanceUid: DicomUIDGenerator.GenerateDerivedFromUUID().UID, sopInstanceUid: "bad id");
});
}
public DicomFileGenerator GenerateNewSeries()
{
baseDataset.AddOrUpdate(DicomTag.SeriesInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID());
baseDataset.AddOrUpdate(DicomTag.SOPInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID());
return(this);
}
public async Task Retrieve_Instance_BadUids()
{
var httpClient = GetHttpClient();
var wado = new WadoService(httpClient);
await Assert.ThrowsAsync <ArgumentNullException>(async() =>
{
await wado.Retrieve(null, seriesInstanceUid: null, sopInstanceUid: null);
});
await Assert.ThrowsAsync <DicomValidationException>(async() =>
{
await wado.Retrieve("bad uid", seriesInstanceUid: null, sopInstanceUid: null);
});
await Assert.ThrowsAsync <ArgumentNullException>(async() =>
{
await wado.Retrieve(DicomUIDGenerator.GenerateDerivedFromUUID().UID, seriesInstanceUid: null, sopInstanceUid: null);
});
await Assert.ThrowsAsync <DicomValidationException>(async() =>
{
await wado.Retrieve(DicomUIDGenerator.GenerateDerivedFromUUID().UID, seriesInstanceUid: "bad id", sopInstanceUid: null);
});
await Assert.ThrowsAsync <ArgumentNullException>(async() =>
{
await wado.Retrieve(DicomUIDGenerator.GenerateDerivedFromUUID().UID, seriesInstanceUid: DicomUIDGenerator.GenerateDerivedFromUUID().UID, sopInstanceUid: null);
});
await Assert.ThrowsAsync <DicomValidationException>(async() =>
{
await wado.Retrieve(DicomUIDGenerator.GenerateDerivedFromUUID().UID, seriesInstanceUid: DicomUIDGenerator.GenerateDerivedFromUUID().UID, sopInstanceUid: "bad uid");
});
}
public async Task ProcessorRequest_ShallQueryByAccessionNumberAndRetrieve()
{
var cancellationTokenSource = new CancellationTokenSource();
var storagePath = "/store";
_fileSystem.Directory.CreateDirectory(storagePath);
#region Test Data
var url = "http://uri.test/";
var request = new InferenceRequest
{
PayloadId = Guid.NewGuid().ToString(),
JobId = Guid.NewGuid().ToString(),
TransactionId = Guid.NewGuid().ToString(),
};
request.InputMetadata = new InferenceRequestMetadata
{
Details = new InferenceRequestDetails
{
Type = InferenceRequestType.AccessionNumber,
AccessionNumber = new List <string>()
{
"ABC"
}
}
};
request.InputResources.Add(
new RequestInputDataResource
{
Interface = InputInterfaceType.Algorithm,
ConnectionDetails = new InputConnectionDetails()
});
request.InputResources.Add(
new RequestInputDataResource
{
Interface = InputInterfaceType.DicomWeb,
ConnectionDetails = new InputConnectionDetails
{
AuthId = "token",
AuthType = ConnectionAuthType.Basic,
Uri = url
}
});
Assert.True(request.IsValid(out string _));
#endregion Test Data
request.ConfigureTemporaryStorageLocation(storagePath);
_dicomToolkit.Setup(p => p.Save(It.IsAny <DicomFile>(), It.IsAny <string>()));
_inferenceRequestStore.SetupSequence(p => p.Take(It.IsAny <CancellationToken>()))
.Returns(Task.FromResult(request))
.Returns(() =>
{
cancellationTokenSource.Cancel();
throw new OperationCanceledException("canceled");
});
_jobStore.Setup(p => p.Add(It.IsAny <InferenceJob>(), It.IsAny <bool>()));
var studyInstanceUids = new List <string>()
{
DicomUIDGenerator.GenerateDerivedFromUUID().UID,
DicomUIDGenerator.GenerateDerivedFromUUID().UID
};
_handlerMock = new Mock <HttpMessageHandler>();
_handlerMock.Protected()
.Setup <Task <HttpResponseMessage> >(
"SendAsync",
ItExpr.Is <HttpRequestMessage>(p => p.RequestUri.Query.Contains("ABC")),
ItExpr.IsAny <CancellationToken>())
.ReturnsAsync(() =>
{
return(GenerateQueryResult(DicomTag.AccessionNumber, "ABC", studyInstanceUids));
});
_handlerMock.Protected()
.Setup <Task <HttpResponseMessage> >(
"SendAsync",
ItExpr.Is <HttpRequestMessage>(p => !p.RequestUri.Query.Contains("ABC")),
ItExpr.IsAny <CancellationToken>())
.ReturnsAsync(() =>
{
return(GenerateMultipartResponse());
});
_httpClientFactory.Setup(p => p.CreateClient(It.IsAny <string>()))
.Returns(new HttpClient(_handlerMock.Object));
_storageInfoProvider.Setup(p => p.HasSpaceAvailableToRetrieve).Returns(true);
_storageInfoProvider.Setup(p => p.AvailableFreeSpace).Returns(100);
var store = new DataRetrievalService(
_loggerFactory.Object,
_httpClientFactory.Object,
_logger.Object,
_fileSystem,
_dicomToolkit.Object,
_serviceScopeFactory.Object,
_cleanupQueue.Object,
_storageInfoProvider.Object);
await store.StartAsync(cancellationTokenSource.Token);
BlockUntilCancelled(cancellationTokenSource.Token);
_handlerMock.Protected().Verify(
"SendAsync",
Times.Once(),
ItExpr.Is <HttpRequestMessage>(req =>
req.Method == HttpMethod.Get &&
req.RequestUri.Query.Contains("00080050=ABC")),
ItExpr.IsAny <CancellationToken>());
foreach (var studyInstanceUid in studyInstanceUids)
{
_handlerMock.Protected().Verify(
"SendAsync",
Times.Once(),
ItExpr.Is <HttpRequestMessage>(req =>
req.Method == HttpMethod.Get &&
req.RequestUri.ToString().StartsWith($"{url}studies/{studyInstanceUid}")),
ItExpr.IsAny <CancellationToken>());
}
_jobStore.Verify(p => p.Add(It.IsAny <InferenceJob>(), false), Times.Once());
_dicomToolkit.Verify(p => p.Save(It.IsAny <DicomFile>(), It.IsAny <string>()), Times.Exactly(studyInstanceUids.Count));
_storageInfoProvider.Verify(p => p.HasSpaceAvailableToRetrieve, Times.AtLeastOnce());
_storageInfoProvider.Verify(p => p.AvailableFreeSpace, Times.Never());
_cleanupQueue.Verify(p => p.QueueInstance(It.IsAny <string>()), Times.Exactly(2));
}
// static private void StartGdcm()
// {
// var s = new gdcm.Reader();
// s.SetFileName("/mnt/c/Users/nikol/Desktop/CR.1.871.3.1522049724.50292.18240.95439262.3570939512.1.1.1");
// bool b = s.CanRead();
// bool d = s.Read();
// }
static private unsafe void Main(string[] args)
{
// ComparingDicomFiles.Start(args);
// return;
// StartGdcm();
Dicom.Imaging.Codec.TranscoderManager.SetImplementation(new NativeTranscoderManager());
ImageManager.SetImplementation(WinFormsImageManager.Instance);
const string filePath = "/mnt/d/DICOM/Fluorography/favorite/jpeg-process14-1/sources/1.871.3.2050448135.34720.20335.72851334.2248937210.1.1.1";
DicomFile dicomFile = DicomFile.Open(filePath);
DicomDataset dataset = dicomFile.Dataset;
DicomImage dicomImage = new DicomImage(dataset, 0);
var image = dicomImage.RenderImage(0);
var bitmap = image.AsSharedBitmap();
bitmap.Save("/mnt/c/Users/nikol/Desktop/image-new.png");
byte[] pixelData;
Dictionary <string, string> meta;
using (FileStream readStream = new FileStream(filePath, FileMode.Open, FileAccess.Read))
pixelData = DicomDatasetExtensions.DecodeImage(readStream, out meta).PixelData;
// using (FileStream readStream = new FileStream(sc, FileMode.Open, FileAccess.Read))
// pixelData = DicomDatasetExtensions.DecodeImage(readStream, out meta).PixelData;
ushort width = dataset.GetValue <ushort>(DicomTag.Columns, 0);
ushort height = dataset.GetValue <ushort>(DicomTag.Rows, 0);
byte[] pixelData2 = new byte[pixelData.Length / 2 * 3];
double windowCenter = dataset.GetValue <double>(DicomTag.WindowCenter, 0);
double windowWidth = dataset.GetValue <double>(DicomTag.WindowWidth, 0);
fixed(byte *pPixelData = &pixelData[0])
for (int pixelIndex = 0; pixelIndex != pixelData.Length / 2; pixelIndex++)
{
int rowIndex = pixelIndex / width;
pixelData2[pixelIndex * 3 + (int)(rowIndex / (double)height * 3)] = (byte)(Math.Clamp((*(((ushort *)pPixelData) + pixelIndex) - windowCenter + windowWidth * 0.5), 0.0, windowWidth) / windowWidth * 255.0);
}
meta = new Dictionary <string, string>();
foreach (var item in dataset)
{
try
{
string value = dataset.GetValue <string>(item.Tag, 0);
int count = dataset.GetValueCount(item.Tag);
for (int valueIndex = 1; valueIndex != count; valueIndex++)
{
value += $"\\{dataset.GetValue<string>(item.Tag, valueIndex)}";
}
meta.Add(item.Tag.ToString().Replace("(", string.Empty).Replace(")", string.Empty).Replace(',', '|'), value);
}
catch
{
}
}
fixed(byte *p = &pixelData2[0])
{
var im = itk.simple.SimpleITK.ImportAsUInt8(new IntPtr(p), new itk.simple.VectorUInt32(new uint[] { width, height }), new itk.simple.VectorDouble(new double[] { 1, 1 }), new itk.simple.VectorDouble(new double[] { 0, 0 }), new itk.simple.VectorDouble(new double[] { 1, 0, 0, 1 }), 3);
itk.simple.ImageFileWriter writer = new itk.simple.ImageFileWriter();
writer.SetFileName("/mnt/c/Users/nikol/Desktop/rewritten.dcm");
writer.KeepOriginalImageUIDOff();
foreach (var pair in meta)
{
im.SetMetaData(pair.Key, pair.Value);
}
writer.SetImageIO("GDCMImageIO");
writer.UseCompressionOff();
writer.Execute(im);
writer.Dispose();
im.Dispose();
}
// dicomFile = DicomFile.Open("/mnt/c/Users/nikol/Desktop/CR.1.871.3.1522049724.50292.18240.95439262.3570939512.1.1.dcm");
// dicomFile.Dataset.AddOrUpdate<string>(DicomTag.StudyInstanceUID, dicomFile.Dataset.GetSingleValue<string>(DicomTag.StudyInstanceUID));
// dicomFile.Save("/mnt/c/Users/nikol/Desktop/CR.1.871.3.1522049724.50292.18240.95439262.3570939512.1.2.dcm");
DicomDataset dataset2 = new DicomDataset();
dataset.CopyTo(dataset2);
dataset = dataset2;
DicomPixelData dicomPixelData = DicomPixelData.Create(dataset, true);
dicomPixelData.AddFrame(new MemoryByteBuffer(pixelData2));
dataset.AddOrUpdate(DicomTag.StudyInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID());
dataset.AddOrUpdate(DicomTag.SeriesInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID());
dataset.AddOrUpdate(DicomTag.SOPInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID());
dataset.AddOrUpdate(DicomTag.BitsAllocated, (ushort)8);
dataset.AddOrUpdate(DicomTag.BitsStored, (ushort)8);
dataset.AddOrUpdate(DicomTag.HighBit, (ushort)7);
dataset.AddOrUpdate(DicomTag.PixelRepresentation, (ushort)0);
dataset.AddOrUpdate(DicomTag.SamplesPerPixel, (ushort)3);
dataset.AddOrUpdate(DicomTag.PlanarConfiguration, (ushort)0);
dataset.AddOrUpdate(DicomTag.PhotometricInterpretation, PhotometricInterpretation.Rgb.Value);
dataset.AddOrUpdate(DicomTag.WindowCenter, 127.5);
dataset.AddOrUpdate(DicomTag.WindowWidth, 255.0);
dicomFile = new DicomFile(dataset);
dicomFile.Save("/mnt/c/Users/nikol/Desktop/efferent-no-compression.dcm");
var j2000lossy = dataset.Compress(DicomTransferSyntax.JPEGLSLossless, new DicomJpegLsLosslessCodec(), new Dicom.Imaging.Codec.DicomJpegLsParams());
j2000lossy.AddOrUpdate(DicomTag.StudyInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID());
j2000lossy.AddOrUpdate(DicomTag.SeriesInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID());
j2000lossy.AddOrUpdate(DicomTag.SOPInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID());
dicomFile = new DicomFile(j2000lossy);
dicomFile.Save("/mnt/c/Users/nikol/Desktop/efferent-ls-lossless.dcm");
var j2000lossless = dataset.Compress(DicomTransferSyntax.JPEGLSNearLossless, new DicomJpegLsNearLosslessCodec(), new Dicom.Imaging.Codec.DicomJpegLsParams());
j2000lossless.AddOrUpdate(DicomTag.StudyInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID());
j2000lossless.AddOrUpdate(DicomTag.SeriesInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID());
j2000lossless.AddOrUpdate(DicomTag.SOPInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID());
dicomFile = new DicomFile(j2000lossless);
dicomFile.Save("/mnt/c/Users/nikol/Desktop/efferent-ls-near-lossless.dcm");
// RemovePixelDataProgram.Start(args);
// ItkSimpleTestProgram.Start(args);
// ImageTestProgram.Start(args);
// CheckImageAttributesProgram.Start(args);
// TestDicom48bpp.Start(args);
// Testing3D.Start(args);
// TestingWindowPresets.Start(args);
// TestingMultiImageDicom.Start(args);
// ComparingDicomFiles.Start(args);
// PresentationState.Start(args);
// PresentationStateAnalyzer.Start(args);
}
public async Task <(DicomUID affectedInstanceUid, string studyInstanceUid, bool result)> SendMppsInProgressAsync(string serverIp, int serverPort, string serverAET, string localAET, DicomDataset worklistItem)
{
DicomSequence procedureStepSeq = worklistItem.GetSequence(DicomTag.ScheduledProcedureStepSequence);
// A worklistitem may have a list of scheduledprocedureSteps.
// For each of them you have to send separate MPPS InProgress- and Completed-messages.
// there in this example we will only send for the first procedure step
DicomDataset procedureStep = procedureStepSeq.First();
// get study instance UID from MWL query resault
string studyInstanceUID = worklistItem.GetSingleValueOrDefault(DicomTag.StudyInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID().UID);
DicomDataset dataset = new DicomDataset
{
{ DicomTag.PatientName, worklistItem.GetSingleValueOrDefault(DicomTag.PatientName, string.Empty) },
{ DicomTag.PatientID, worklistItem.GetSingleValueOrDefault(DicomTag.PatientID, string.Empty) },
{ DicomTag.PatientBirthDate, worklistItem.GetSingleValueOrDefault(DicomTag.PatientBirthDate, string.Empty) },
{ DicomTag.PatientSex, worklistItem.GetSingleValueOrDefault(DicomTag.PatientSex, string.Empty) },
{ DicomTag.StudyID, worklistItem.GetSingleValueOrDefault(DicomTag.StudyID, string.Empty) },
{ DicomTag.StudyInstanceUID, studyInstanceUID },
{ DicomTag.PerformedProcedureStepID, procedureStep.GetSingleValueOrDefault(DicomTag.ScheduledProcedureStepID, string.Empty) },
{ DicomTag.PerformedProcedureStepDescription, procedureStep.GetSingleValueOrDefault(DicomTag.ScheduledProcedureStepID, string.Empty) },
// set status
{ DicomTag.PerformedProcedureStepStatus, IN_PROGRESS },
{ DicomTag.PerformedProcedureTypeDescription, string.Empty },
{ DicomTag.PerformedProcedureStepStartDate, DateTime.Now },
{ DicomTag.PerformedProcedureStepStartTime, DateTime.Now },
{ DicomTag.PerformedProcedureStepEndDate, string.Empty },
{ DicomTag.PerformedProcedureStepEndTime, string.Empty },
{ DicomTag.PerformedLocation, string.Empty },
{ DicomTag.PerformedStationAETitle, localAET },
{ DicomTag.PerformedStationName, localAET },
// get modality from MWL query result
{ DicomTag.Modality, procedureStep.GetSingleValueOrDefault(DicomTag.Modality, string.Empty) },
{ DicomTag.PerformedProtocolCodeSequence, new DicomDataset() },
{ DicomTag.ProcedureCodeSequence, new DicomDataset() },
{ DicomTag.ReferencedPatientSequence, new DicomDataset() }
};
// set Attribute Sequence data
DicomDataset content = new DicomDataset
{
{ DicomTag.AccessionNumber, worklistItem.GetSingleValueOrDefault(DicomTag.AccessionNumber, string.Empty) },
{ DicomTag.StudyInstanceUID, studyInstanceUID },
{ DicomTag.ReferencedStudySequence, new DicomDataset() },
{ DicomTag.RequestedProcedureID, worklistItem.GetSingleValueOrDefault(DicomTag.RequestedProcedureID, string.Empty) },
{ DicomTag.RequestedProcedureDescription, worklistItem.GetSingleValueOrDefault(DicomTag.RequestedProcedureDescription, string.Empty) },
{ DicomTag.ScheduledProcedureStepID, procedureStep.GetSingleValueOrDefault(DicomTag.ScheduledProcedureStepID, string.Empty) },
{ DicomTag.ScheduledProcedureStepDescription, procedureStep.GetSingleValueOrDefault(DicomTag.ScheduledProcedureStepDescription, string.Empty) },
{ DicomTag.ScheduledProtocolCodeSequence, new DicomDataset() }
};
DicomSequence attr_Sequence = new DicomSequence(DicomTag.ScheduledStepAttributesSequence, content);//"Scheduled Step Attribute Sequence"
dataset.Add(attr_Sequence);
dataset.Add(DicomTag.PerformedSeriesSequence, new DicomDataset());
// create an unique UID as the effectedinstamceUid, this id will be needed for the N-SET also
DicomUID effectedinstamceUid = DicomUID.Generate();
DicomNCreateRequest dicomStartRequest = new DicomNCreateRequest(DicomUID.ModalityPerformedProcedureStepSOPClass, effectedinstamceUid)
{
Dataset = dataset
};
bool result = false;
dicomStartRequest.OnResponseReceived += (req, res) =>
{
if (res != null)
{
if (res.Status == DicomStatus.Success)
{
Logger.Debug("Set study [{0}] [In Progress] Success.", studyInstanceUID);
result = true;
}
else
{
Logger.Warn("Set study [{0}] [In Progress] Failed. [{1}]", studyInstanceUID, res.Status);
}
}
};
DicomClient client = new DicomClient(serverIp, serverPort, false, localAET, serverAET);
await client.AddRequestAsync(dicomStartRequest);
await client.SendAsync();
return(effectedinstamceUid, studyInstanceUID, result);
}
public async Task ClientHandleNEventReport_SynchronousEvent()
{
var port = Ports.GetNext();
using (DicomServerFactory.Create <SimpleStorageComitmentProvider>(port))
{
DicomStatus status = null;
int verifiedInstances = 0;
DateTime stampNActionResponse = DateTime.MinValue;
DateTime stampNEventReportRequest = DateTime.MinValue;
var dicomClient = DicomClientFactory.Create("127.0.0.1", port, false, "SCU", "ANY-SCP");
var nActionDicomDataSet = new DicomDataset
{
{ DicomTag.TransactionUID, DicomUIDGenerator.GenerateDerivedFromUUID().UID },
{
DicomTag.ReferencedSOPSequence,
new DicomDataset()
{
{ DicomTag.ReferencedSOPClassUID, "1.2.840.10008.5.1.4.1.1.1" },
{ DicomTag.ReferencedSOPInstanceUID, "1.3.46.670589.30.2273540226.4.54" }
},
new DicomDataset()
{
{ DicomTag.ReferencedSOPClassUID, "1.2.840.10008.5.1.4.1.1.1" },
{ DicomTag.ReferencedSOPInstanceUID, "1.3.46.670589.30.2273540226.4.59" }
}
}
};
var nActionRequest = new DicomNActionRequest(DicomUID.StorageCommitmentPushModel, DicomUID.StorageCommitmentPushModel, 1)
{
Dataset = nActionDicomDataSet,
OnResponseReceived = (DicomNActionRequest request, DicomNActionResponse response) =>
{
status = response.Status;
stampNActionResponse = DateTime.Now;
},
};
await dicomClient.AddRequestAsync(nActionRequest);
dicomClient.OnNEventReportRequest = (eventReq) =>
{
var refSopSequence = eventReq.Dataset.GetSequence(DicomTag.ReferencedSOPSequence);
foreach (var item in refSopSequence.Items)
{
verifiedInstances += 1;
}
stampNEventReportRequest = DateTime.Now;
return(Task.FromResult(new DicomNEventReportResponse(eventReq, DicomStatus.Success)));
};
dicomClient.ClientOptions.AssociationLingerTimeoutInMs = (int)TimeSpan.FromSeconds(5).TotalMilliseconds;
await dicomClient.SendAsync().ConfigureAwait(false);
Assert.Equal(DicomStatus.Success, status);
Assert.Equal(2, verifiedInstances);
Assert.True(stampNActionResponse < stampNEventReportRequest);
}
}
static private DicomPre CreatePresentationState(string[] sourceFilePaths, bool colorSoftcopy, string seriesDescription, int layerCount = 1)
{
DicomPre pre = default;
DicomSource[] sources = new DicomSource[sourceFilePaths.Length];
for (int sourceFileIndex = 0; sourceFileIndex != sourceFilePaths.Length; sourceFileIndex++)
{
DicomDataset sourceDataset = DicomFile.Open(sourceFilePaths[sourceFileIndex]).Dataset;
sources[sourceFileIndex].StudyInstanceUid = sourceDataset.GetSingleValue <string>(DicomTag.StudyInstanceUID);
sources[sourceFileIndex].SeriesInstanceUid = sourceDataset.GetSingleValue <string>(DicomTag.SeriesInstanceUID);
sources[sourceFileIndex].SopInstanceUid = sourceDataset.GetSingleValue <string>(DicomTag.SOPInstanceUID);
sources[sourceFileIndex].SopClassUid = sourceDataset.GetSingleValue <string>(DicomTag.SOPClassUID);
sources[sourceFileIndex].Columns = sourceDataset.GetSingleValue <ushort>(DicomTag.Columns);
sources[sourceFileIndex].Rows = sourceDataset.GetSingleValue <ushort>(DicomTag.Rows);
sources[sourceFileIndex].PixelSpacings = sourceDataset.GetValues <double>(DicomTag.PixelSpacing);
sources[sourceFileIndex].WindowCenters = sourceDataset.GetValues <double>(DicomTag.WindowCenter);
sources[sourceFileIndex].WindowWidths = sourceDataset.GetValues <double>(DicomTag.WindowWidth);
}
pre.PresentationStateDataset = new DicomDataset();
pre.Columns = sources[0].Columns;
pre.Rows = sources[0].Rows;
pre.PresentationStateDataset.Add(DicomTag.StudyInstanceUID, sources[0].StudyInstanceUid);
pre.PresentationStateDataset.Add(DicomTag.SeriesInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID().UID);
pre.PresentationStateDataset.Add(DicomTag.SOPInstanceUID, DicomUIDGenerator.GenerateDerivedFromUUID().UID);
pre.PresentationStateDataset.Add(DicomTag.SOPClassUID, colorSoftcopy ? DicomUID.ColorSoftcopyPresentationStateStorage : DicomUID.GrayscaleSoftcopyPresentationStateStorage);
pre.PresentationStateDataset.Add(DicomTag.Modality, "PR");
pre.PresentationStateDataset.Add(DicomTag.SpecificCharacterSet, "ISO_IR 192");
pre.PresentationStateDataset.AddOrUpdate(DicomTag.SeriesDescription, seriesDescription);
DicomSequence referencedSeriesSequence = new DicomSequence(DicomTag.ReferencedSeriesSequence);
DicomDataset[] referencedSeriesDatasets = new DicomDataset[sourceFilePaths.Length];
for (int sourceFileIndex = 0; sourceFileIndex != sourceFilePaths.Length; sourceFileIndex++)
{
referencedSeriesDatasets[sourceFileIndex] = new DicomDataset().NotValidated();
referencedSeriesDatasets[sourceFileIndex].Add(DicomTag.SeriesInstanceUID, sources[0].SeriesInstanceUid);
DicomSequence referencedImageSequence = new DicomSequence(DicomTag.ReferencedImageSequence);
DicomDataset referencedImageDataset = new DicomDataset();
referencedImageDataset.Add(DicomTag.ReferencedSOPClassUID, sources[sourceFileIndex].SopClassUid);
referencedImageDataset.Add(DicomTag.ReferencedSOPInstanceUID, sources[sourceFileIndex].SopInstanceUid);
referencedImageSequence.Items.Add(referencedImageDataset);
referencedSeriesDatasets[sourceFileIndex].Add(referencedImageSequence);
referencedSeriesSequence.Items.Add(referencedSeriesDatasets[sourceFileIndex]);
}
pre.PresentationStateDataset.Add(referencedSeriesSequence);
DicomSequence graphicLayerSequence = new DicomSequence(DicomTag.GraphicLayerSequence);
for (int layerIndex = 0; layerIndex != layerCount; layerIndex++)
{
DicomDataset graphicLayerDataset = new DicomDataset();
graphicLayerDataset.Add(DicomTag.GraphicLayer, layerIndex.ToString());
graphicLayerDataset.Add(DicomTag.GraphicLayerOrder, layerIndex);
graphicLayerSequence.Items.Add(graphicLayerDataset);
}
pre.PresentationStateDataset.Add(graphicLayerSequence);
DicomSequence graphicAnnotationSequence = new DicomSequence(DicomTag.GraphicAnnotationSequence);
pre.GraphicObjectSequences = new DicomSequence[sourceFilePaths.Length][];
pre.TextObjectSequences = new DicomSequence[sourceFilePaths.Length][];
for (int sourceFileIndex = 0; sourceFileIndex != sourceFilePaths.Length; sourceFileIndex++)
{
pre.GraphicObjectSequences[sourceFileIndex] = new DicomSequence[layerCount];
pre.TextObjectSequences[sourceFileIndex] = new DicomSequence[layerCount];
for (int layerIndex = 0; layerIndex != layerCount; layerIndex++)
{
DicomDataset graphicAnnotationDataset = new DicomDataset();
graphicAnnotationDataset.Add(referencedSeriesDatasets[sourceFileIndex].GetSequence(DicomTag.ReferencedImageSequence));
pre.GraphicObjectSequences[sourceFileIndex][layerIndex] = new DicomSequence(DicomTag.GraphicObjectSequence);
pre.TextObjectSequences[sourceFileIndex][layerIndex] = new DicomSequence(DicomTag.TextObjectSequence);
graphicAnnotationDataset.Add(pre.GraphicObjectSequences[sourceFileIndex][layerIndex]);
graphicAnnotationDataset.Add(pre.TextObjectSequences[sourceFileIndex][layerIndex]);
graphicAnnotationDataset.Add(DicomTag.GraphicLayer, layerIndex.ToString());
graphicAnnotationSequence.Items.Add(graphicAnnotationDataset);
}
}
pre.PresentationStateDataset.Add(graphicAnnotationSequence);
DicomSequence displayedAreaSelectionSequence = new DicomSequence(DicomTag.DisplayedAreaSelectionSequence);
for (int sourceFileIndex = 0; sourceFileIndex != sourceFilePaths.Length; sourceFileIndex++)
{
DicomDataset displayedAreaSelectionDataset = new DicomDataset();
displayedAreaSelectionDataset.Add(referencedSeriesDatasets[sourceFileIndex].GetSequence(DicomTag.ReferencedImageSequence));
displayedAreaSelectionDataset.Add(DicomTag.DisplayedAreaTopLeftHandCorner, 1, 1);
displayedAreaSelectionDataset.Add(DicomTag.DisplayedAreaBottomRightHandCorner, (int)pre.Columns, (int)pre.Rows);
displayedAreaSelectionDataset.Add(DicomTag.PresentationSizeMode, "SCALE TO FIT");
displayedAreaSelectionDataset.Add(DicomTag.PresentationPixelSpacing, sources[sourceFileIndex].PixelSpacings);
displayedAreaSelectionSequence.Items.Add(displayedAreaSelectionDataset);
}
pre.PresentationStateDataset.Add(displayedAreaSelectionSequence);
DicomSequence softcopyVoiLutSequence = new DicomSequence(DicomTag.SoftcopyVOILUTSequence);
DicomDataset softcopyVoiLutDataset = new DicomDataset();
softcopyVoiLutDataset.Add(DicomTag.WindowCenter, sources[0].WindowCenters);
softcopyVoiLutDataset.Add(DicomTag.WindowWidth, sources[0].WindowWidths);
softcopyVoiLutSequence.Items.Add(softcopyVoiLutDataset);
pre.PresentationStateDataset.Add(softcopyVoiLutSequence);
return(pre);
}
