public void SetOpsForRead(ReadNumber num, List <StitchableItem> ops)
{
if (num == ReadNumber.Read1)
{
R1Ops = ops;
R1OpsCount = ops.Count;
R1HasReferenceSpan = ops.Any(x => CigarExtensions.IsReferenceSpan(x.CigarOp));
}
else
{
R2Ops = ops;
R2OpsCount = ops.Count;
R2HasReferenceSpan = ops.Any(x => CigarExtensions.IsReferenceSpan(x.CigarOp));
}
}
public void AddOpsForRead(ReadNumber num, List <StitchableItem> ops)
{
if (num == ReadNumber.Read1)
{
R1OpsCount += ops.Count;
R1Ops.AddRange(ops);
if (!R1HasReferenceSpan)
{
R1HasReferenceSpan = ops.Any(x => CigarExtensions.IsReferenceSpan(x.CigarOp));
}
}
else
{
R2OpsCount += ops.Count;
R2Ops.AddRange(ops);
if (!R2HasReferenceSpan)
{
R2HasReferenceSpan = ops.Any(x => CigarExtensions.IsReferenceSpan(x.CigarOp));
}
}
}
public void AddOpsForRead(ReadNumber num, StitchableItem ops)
{
if (num == ReadNumber.Read1)
{
R1OpsCount++;
R1Ops.Add(ops);
if (CigarExtensions.IsReferenceSpan(ops.CigarOp))
{
R1HasReferenceSpan = true;
}
}
else
{
R2OpsCount++;
R2Ops.Add(ops);
if (CigarExtensions.IsReferenceSpan(ops.CigarOp))
{
R2HasReferenceSpan = true;
}
}
}
