public void TestFormatRandom()
{
Setup();
var format = new ITraqResultXmlFormatRandomReader();
format.Open(@TestContext.CurrentContext.TestDirectory + "/../../../data//ITraqResult.xml");
CheckExtension.CheckEquals(t2, format.Read("S2", 355));
CheckExtension.CheckEquals(t1, format.Read("S1", 255));
Assert.AreEqual(1281, format.ReadXmlBytes("S1", 255).Length);
Assert.AreEqual(1386, format.ReadXmlBytes("S2", 355).Length);
}
public void RunFormat(IITraqResultFileFormat format)
{
Setup();
var tmpFilename = @TestContext.CurrentContext.TestDirectory + "/../../../data//temp.xml";
format.WriteToFile(tmpFilename, tr);
FileAssert.AreEqual(@TestContext.CurrentContext.TestDirectory + "/../../../data//ITraqResult.xml", tmpFilename);
var newtr = format.ReadFromFile(tmpFilename);
CheckExtension.CheckEquals(tr, newtr);
format.ReadPeaks = false;
var newstr2 = format.ReadFromFile(tmpFilename);
Assert.IsEmpty(newstr2[0].RawPeaks);
Assert.IsEmpty(newstr2[0].PeakInIsolationWindow);
Assert.IsEmpty(newstr2[1].RawPeaks);
Assert.IsEmpty(newstr2[1].PeakInIsolationWindow);
format.Accept = (m => 355 == m.Scan.Scan);
var newstr3 = format.ReadFromFile(tmpFilename);
Assert.AreEqual(1, newstr3.Count);
Assert.AreEqual(355, newstr3[0].Scan.Scan);
var lines = File.ReadAllText(tmpFilename);
ITraqResultXmlFormatReader reader = new ITraqResultXmlFormatReader();
reader.OpenByContent(lines);
var item = reader.Next();
CheckExtension.CheckEquals(tr[0], item);
item = reader.Next();
CheckExtension.CheckEquals(tr[1], item);
File.Delete(tmpFilename);
if (File.Exists(tmpFilename + ".index"))
{
File.Delete(tmpFilename + ".index");
}
}
public void TestReadWrite()
{
List <FileIndexItem> items = new List <FileIndexItem>();
items.Add(new FileIndexItem(12, 54, "TEST1"));
items.Add(new FileIndexItem(122, 776, "TEST2"));
items.Add(new FileIndexItem(12483, 39484, "TEST3"));
items.Add(new FileIndexItem(121111111111111, 38948392309484, "TEST4"));
var format = new FileIndexFormat();
var tmpFilename = TestContext.CurrentContext.TestDirectory + "/../../../data//fif.txt";
format.WriteToFile(tmpFilename, items);
var newitems = format.ReadFromFile(tmpFilename);
CheckExtension.CheckEquals(items, newitems);
File.Delete(tmpFilename);
}