public ImmutableList <byte> GetNewTextId(ChromGroupHeaderInfo chromGroupHeaderInfo)
{
byte[] textIdBytes = _originalCache.GetTextIdBytes(chromGroupHeaderInfo.TextIdIndex, chromGroupHeaderInfo.TextIdLen);
if (textIdBytes == null)
{
return(null);
}
const CacheFormatVersion versionNewTextId = CacheFormatVersion.Thirteen;
ImmutableList <byte> newTextId;
if (_originalCache.Version < versionNewTextId ||
_cacheFormat.FormatVersion >= versionNewTextId)
{
newTextId = ImmutableList.ValueOf(textIdBytes);
}
else
{
if (textIdBytes[0] == '#')
{
newTextId = ImmutableList.ValueOf(textIdBytes);
}
else
{
var oldKey = new PeptideLibraryKey(Encoding.UTF8.GetString(textIdBytes), 0);
var newKey = oldKey.FormatToOneDecimal();
newTextId = ImmutableList.ValueOf(Encoding.UTF8.GetBytes(newKey.ModifiedSequence));
}
}
return(newTextId);
}
// ReSharper disable NonLocalizedString
public static int GetStructSize(CacheFormatVersion formatVersion)
{
if (formatVersion >= CacheFormatVersion.Thirteen)
{
return(52);
}
if (formatVersion > CacheFormatVersion.Eight)
{
return(48);
}
else if (formatVersion > CacheFormatVersion.Five)
{
return(36);
}
else if (formatVersion > CacheFormatVersion.Four)
{
return(28);
}
else if (formatVersion > CacheFormatVersion.Three)
{
return(24);
}
else if (formatVersion > CacheFormatVersion.Two)
{
return(20);
}
else
{
return(12);
}
}
private SkylineVersion(Func <String> getLabelFunc, String versionName, CacheFormatVersion cacheFormatVersion, DocumentFormat srmDocumentVersion)
{
_getLabelFunc = getLabelFunc;
InvariantVersionName = versionName;
CacheFormatVersion = cacheFormatVersion;
SrmDocumentVersion = srmDocumentVersion;
}
public ShareType DecideShareType(FolderInformation folderInfo, SrmDocument document)
{
ShareType shareType = ShareType.DEFAULT;
var settings = document.Settings;
Assume.IsTrue(document.IsLoaded);
var cacheVersion = settings.HasResults ? settings.MeasuredResults.CacheVersion : null;
if (!cacheVersion.HasValue)
{
// The document may not have any chromatogram data.
return(shareType);
}
CacheFormatVersion supportedVersion = GetSupportedSkydVersion(folderInfo);
if (supportedVersion >= cacheVersion.Value)
{
return(shareType);
}
var skylineVersion = SkylineVersion.SupportedForSharing().FirstOrDefault(ver => ver.CacheFormatVersion <= supportedVersion);
if (skylineVersion == null)
{
throw new PanoramaServerException(string.Format(
Resources.PublishDocumentDlg_ServerSupportsSkydVersion_, (int)cacheVersion.Value));
}
return(shareType.ChangeSkylineVersion(skylineVersion));
}
public static CacheFormat FromVersion(CacheFormatVersion formatVersion)
{
if (formatVersion > CacheFormatVersion.CURRENT)
{
throw new NotSupportedException();
}
CacheFormatVersion versionRequired;
if (formatVersion.CompareTo(CacheHeaderStruct.WithStructSizes) >= 0)
{
versionRequired = CacheHeaderStruct.WithStructSizes;
}
else
{
versionRequired = formatVersion;
}
return(new CacheFormat
{
FormatVersion = formatVersion,
VersionRequired = versionRequired,
ChromPeakSize = ChromPeak.GetStructSize(formatVersion),
ChromTransitionSize = ChromTransition.GetStructSize(formatVersion),
CachedFileSize = CachedFileHeaderStruct.GetStructSize(formatVersion),
ChromGroupHeaderSize = ChromGroupHeaderInfo.GetStructSize(formatVersion)
});
}
public static StructSerializer <CacheHeaderStruct> GetStructSerializer(CacheFormatVersion cacheFormatVersion)
{
return(new StructSerializer <CacheHeaderStruct>()
{
ItemSizeOnDisk = GetStructSize(cacheFormatVersion),
PadFromStart = true
});
}
public CacheHeaderStruct(CacheFormat cacheFormat) : this()
{
chromPeakSize = cacheFormat.ChromPeakSize;
chromTransitionSize = cacheFormat.ChromTransitionSize;
chromGroupHeaderSize = cacheFormat.ChromGroupHeaderSize;
cachedFileSize = cacheFormat.CachedFileSize;
formatVersion = cacheFormat.FormatVersion;
versionRequired = cacheFormat.VersionRequired;
}
public static int GetStructSize(CacheFormatVersion cacheFormatVersion)
{
if (cacheFormatVersion >= WithStructSizes)
{
return(Marshal.SizeOf <CacheHeaderStruct>());
}
if (cacheFormatVersion >= CacheFormatVersion.Nine)
{
return(Marshal.SizeOf <CacheHeaderStruct>() - (int)Marshal.OffsetOf <CacheHeaderStruct>(@"locationScanIds"));
}
if (cacheFormatVersion >= CacheFormatVersion.Five)
{
return(Marshal.SizeOf <CacheHeaderStruct>() - (int)Marshal.OffsetOf <CacheHeaderStruct>(@"numScoreTypes"));
}
return(Marshal.SizeOf <CacheHeaderStruct>() - (int)Marshal.OffsetOf <CacheHeaderStruct>(@"formatVersion"));
}
private SkylineVersion(Func <String> getLabelFunc, String versionName, CacheFormatVersion cacheFormatVersion,
DocumentFormat srmDocumentVersion) : base(versionName, getLabelFunc)
{
CacheFormatVersion = cacheFormatVersion;
SrmDocumentVersion = srmDocumentVersion;
}
