private async Task ImportDataAsync(string cropCode, string brStationCode, string syncCode, string countryCode,
CNTRequestArgs requestArgs, DataTable tVPColumns, DataTable tVPRows,
DataTable tVPCells, DataTable tVPList, string donorNrColumnName)
{
var p1 = DbContext.CreateInOutParameter("@TestID", requestArgs.TestID, DbType.Int32, int.MaxValue);
DbContext.CommandTimeout = 5 * 60; //5 minutes
await DbContext.ExecuteNonQueryAsync(DataConstants.PR_CNT_IMPORT_MATERIALS,
CommandType.StoredProcedure, args =>
{
args.Add("@TestID", p1);
args.Add("@TestTypeID", requestArgs.TestTypeID);
args.Add("@CropCode", cropCode);
args.Add("@BrStationCode", brStationCode);
args.Add("@SyncCode", syncCode);
args.Add("@CountryCode", countryCode);
args.Add("@UserID", _userContext.GetContext().FullName);
args.Add("@TestName", requestArgs.TestName);
args.Add("@Source", requestArgs.Source);
args.Add("@ObjectID", requestArgs.ObjectID);
args.Add("@ImportLevel", requestArgs.ImportLevel);
args.Add("@TVPColumns", tVPColumns);
args.Add("@TVPRow", tVPRows);
args.Add("@TVPCell", tVPCells);
args.Add("@TVPList", tVPList);
args.Add("@DonorNrColumnName", donorNrColumnName);
args.Add("@FileID", requestArgs.FileID);
});
requestArgs.TestID = p1.Value.ToInt32();
}
public async Task <IHttpActionResult> Import([FromBody] CNTRequestArgs args)
{
if (string.IsNullOrWhiteSpace(args.TestName))
{
return(InvalidRequest("Please provide test name."));
}
if (string.IsNullOrWhiteSpace(args.CropID))
{
return(InvalidRequest("Please provide research group ID."));
}
if (string.IsNullOrWhiteSpace(args.FolderID))
{
return(InvalidRequest("Please provide folder ID."));
}
var data = await _cNTService.ImportDataAsync(Request, args);
var success = !data.Errors.Any() && !data.Warnings.Any();
var fileInfo = await _fileService.GetFileAsync(args.TestID);
var result = new
{
Success = success,
data.Errors,
data.Warnings,
args.TestID,
File = fileInfo,
data.Total,
data.DataResult
};
return(Ok(result));
}
public Task <PhenoneImportDataResult> ImportDataAsync(HttpRequestMessage request, CNTRequestArgs args)
{
return(_cNTRepository.ImportDataFromPhenomeAsync(request, args));
}
public async Task <PhenoneImportDataResult> ImportDataFromPhenomeAsync(HttpRequestMessage request, CNTRequestArgs args)
{
var result = new PhenoneImportDataResult();
var cropCode = "";
var breedingStation = "";
var syncCode = "";
var countryCode = "";
#region Prepare datatables for stored procedure call
var dtCellTVP = new DataTable();
var dtRowTVP = new DataTable();
var dtListTVP = new DataTable();
var dtColumnsTVP = new DataTable();
PrepareTVPS(dtCellTVP, dtRowTVP, dtListTVP, dtColumnsTVP);
#endregion
using (var client = new RestClient(BASE_SVC_URL))
{
var URI = "";
client.SetRequestCookies(request);
#region Get Variables detail from Tree Structure
//call service to get crop code based on cropid
URI = $"/api/v1/researchgroup/info/{ args.CropID}";
var cropDetail = await GetFolderVariablesDetail(client, URI);
if (!cropDetail.TryGetValue("Crop", out cropCode))
{
result.Errors.Add("Crop code not found. Please add crop code first.");
return(result);
}
if (string.IsNullOrWhiteSpace(cropCode))
{
result.Errors.Add("CropCode can not be null or empty.");
return(result);
}
if (cropCode != args.CropCode)
{
result.Errors.Add("Crop code in Phenome and S2S capacity don't match with each other");
return(result);
}
//call service to get Breeding station and SyncCode based on breeding station level call on phenome from folder in tree structure.
URI = $"/api/v1/folder/info/{ args.FolderID}";
var breedingStationDetail = await GetFolderVariablesDetail(client, URI);
if (!breedingStationDetail.TryGetValue("Breeding Station", out breedingStation) && !breedingStationDetail.TryGetValue("BreedStat", out breedingStation))
{
result.Errors.Add("Breeding station not found. Please add Breeding station code first.");
return(result);
}
if (string.IsNullOrWhiteSpace(breedingStation))
{
result.Errors.Add("Breeding station can not be null or empty.");
return(result);
}
//syncCode
if (!breedingStationDetail.TryGetValue("SyncCode", out syncCode))
{
result.Errors.Add("SyncCode not found. Please add SyncCode first.");
return(result);
}
if (string.IsNullOrWhiteSpace(syncCode))
{
result.Errors.Add("SyncCode can not be null or empty.");
return(result);
}
//country code
breedingStationDetail.TryGetValue("Country", out countryCode);
#endregion
if (args.ImportLevel.EqualsIgnoreCase("list"))
{
URI = "/api/v1/simplegrid/grid/create/FieldNursery";
}
else
{
URI = "/api/v1/simplegrid/grid/create/FieldPlants";
}
var response = await client.PostAsync(URI, values =>
{
values.Add("object_type", args.ObjectType);
values.Add("object_id", args.ObjectID);
values.Add("grid_id", args.GridID);
});
await response.EnsureSuccessStatusCodeAsync();
var json1 = await response.Content.DeserializeAsync <PhenomeColumnsResponse>();
if (!json1.Success)
{
throw new UnAuthorizedException(json1.Message);
}
if (!json1.Columns.Any())
{
result.Errors.Add("No columns found.");
return(result);
}
//get field name from settings
var donorColumnName = ConfigurationManager.AppSettings["CNT:DonorNrColumnName"];
//required columns validations
//validate if column Entry Code or another column defined in pipeline variables exists which is stored on Donor Number field
var requiredFields = new List <string>
{
"GID",
"name"
};
if (args.ImportLevel.EqualsIgnoreCase("list"))
{
requiredFields.Add("Entry Code");
}
else
{
requiredFields.Add(donorColumnName);
}
var notFoundColumns = requiredFields.Where(x => !json1.Columns.Any(y => y.desc.EqualsIgnoreCase(x)));
if (notFoundColumns.Any())
{
result.Errors.Add($"Following fields are required but not available in the Phenome grid: ({string.Join(",", notFoundColumns)}).");
return(result);
}
if (!args.ForcedImport && json1.Columns.Count > 50)
{
result.Warnings.Add("You are importing more than 50 columns.This can lead to problem. We recommend to reduce the amount of columns in Phenome. Continue?");
return(result);
}
if (args.ImportLevel.EqualsIgnoreCase("list"))
{
URI = "/api/v1/simplegrid/grid/get_json/FieldNursery?" +
$"object_type={args.ObjectType}&" +
$"object_id={args.ObjectID}&" +
$"grid_id={args.GridID}&" +
"add_header=1&" +
"posStart=0&" +
"count=99999";
}
else
{
URI = "/api/v1/simplegrid/grid/get_json/FieldPlants?" +
$"object_type={args.ObjectType}&" +
$"object_id={args.ObjectID}&" +
$"grid_id={args.GridID}&" +
"add_header=1&" +
"posStart=0&" +
"count=99999";
}
var response2 = await client.GetAsync(URI);
await response2.EnsureSuccessStatusCodeAsync();
var json2 = await response2.Content.DeserializeAsync <PhenomeDataResponse>();
var totalRecords = json2.Properties.Max(x => x.Total_count);
if (totalRecords <= 0)
{
result.Errors.Add("No data to process.");
return(result);
}
var getTraitID = new Func <string, int?>(o =>
{
var traitid = 0;
if (int.TryParse(o, out traitid))
{
if (traitid > 0)
{
return(traitid);
}
}
return(null);
});
var columns1 = json1.Columns.Select(x => new
{
ID = x.id,
ColName = getTraitID(x.variable_id) == null ? x.desc : getTraitID(x.variable_id).ToString(),
DataType = string.IsNullOrWhiteSpace(x.data_type) || x.data_type == "C" ? "NVARCHAR(255)" : x.data_type,
ColLabel = x.desc,
TraitID = getTraitID(x.variable_id)
}).GroupBy(g => g.ColName.Trim(), StringComparer.OrdinalIgnoreCase)
.Select(y =>
{
var elem = y.FirstOrDefault();
var item = new
{
ColumnName = elem.ColName,
elem.ID,
elem.DataType,
elem.ColLabel,
elem.TraitID
};
return(item);
});
var columns2 = json2.Columns.Select((x, i) => new
{
x.Properties[0].ID,
Index = i
}).GroupBy(g => g.ID).Select(x => new
{
ID = x.Key,
x.FirstOrDefault().Index
});
var columns = (from t1 in columns1
join t2 in columns2 on t1.ID equals t2.ID
select new
{
t2.ID,
t2.Index,
ColName = t1.ColumnName,
t1.DataType,
t1.ColLabel,
t1.TraitID
}).ToList();
if (columns.GroupBy(x => x.ColLabel.Trim(), StringComparer.OrdinalIgnoreCase).Any(g => g.Count() > 1))
{
result.Errors.Add("Duplicate column found on " + args.Source);
return(result);
}
//var foundGIDColumn = false;
//var foundNameColumn = false;
for (int i = 0; i < columns.Count; i++)
{
var col = columns[i];
var dr = dtColumnsTVP.NewRow();
//if (col.ColLabel.EqualsIgnoreCase("GID"))
//{
// foundGIDColumn = true;
//}
//else if (col.ColLabel.EqualsIgnoreCase("name"))
//{
// foundNameColumn = true;
//}
dr["ColumnNr"] = i;
dr["TraitID"] = col.TraitID;
dr["ColumnLabel"] = col.ColLabel;
dr["DataType"] = col.DataType;
dtColumnsTVP.Rows.Add(dr);
}
//if (!foundGIDColumn)
//{
// result.Errors.Add("GID column not found. Please add GID column on data grid.");
// return result;
//}
//if (!foundNameColumn)
//{
// result.Errors.Add("Name column not found. Please add Name column on data grid.");
// return result;
//}
var getColIndex = new Func <string, int>(name =>
{
var fldName = columns.FirstOrDefault(o => o.ColLabel.EqualsIgnoreCase(name));
if (fldName != null)
{
return(fldName.Index);
}
return(-1);
});
for (int i = 0; i < json2.Rows.Count; i++)
{
var dr = json2.Rows[i];
var drRow = dtRowTVP.NewRow();
drRow["RowNr"] = i;
drRow["MaterialKey"] = dr.Properties[0].ID;
//prepare rows for list tvp as well
var drList = dtListTVP.NewRow();
drList["RowID"] = dr.Properties[0].ID;
drList["GID"] = dr.Cells[getColIndex("GID")].Value;
drList["Name"] = getColIndex("Name") > 0 ? dr.Cells[getColIndex("Name")].Value : "";
for (int j = 0; j < columns.Count; j++)
{
var col = columns[j];
var drCell = dtCellTVP.NewRow();
var cellval = dr.Cells[col.Index].Value;
if (col.ColLabel.EqualsIgnoreCase("GID"))
{
if (string.IsNullOrWhiteSpace(cellval))
{
result.Errors.Add("GID value can not be empty.");
return(result);
}
drRow["GID"] = cellval;
}
else if (col.ColLabel.EqualsIgnoreCase("Name"))
{
if (string.IsNullOrWhiteSpace(cellval))
{
result.Errors.Add("Name value can not be empty.");
return(result);
}
drRow["Name"] = cellval;
drList["Name"] = cellval;
}
drCell["RowID"] = i;
drCell["ColumnID"] = j;
drCell["Value"] = cellval;
dtCellTVP.Rows.Add(drCell);
}
dtListTVP.Rows.Add(drList);
dtRowTVP.Rows.Add(drRow);
}
//check for duplicate material key
var data = dtRowTVP.AsEnumerable().Select(x => x.Field <string>("MaterialKey"))
.GroupBy(g => g)
.Select(x => new
{
MaterialKey = x.Key,
Count = x.Count()
});
if (data.Any(x => x.MaterialKey.ToText() == string.Empty))
{
result.Errors.Add("Material Key cannot be null or empty");
}
var keys = data.Where(x => x.Count > 1).ToList();
if (keys.Any())
{
var keylist = keys.Select(x => x.MaterialKey).ToList();
var key = keylist.Truncate();
result.Errors.Add($"Duplicate Material key {key}");
}
if (result.Errors.Any())
{
return(result);
}
result.CropCode = cropCode;
result.BrStationCode = breedingStation;
result.SyncCode = syncCode;
result.CountryCode = countryCode;
result.TVPColumns = dtColumnsTVP;
result.TVPRows = dtRowTVP;
result.TVPCells = dtCellTVP;
result.TVPList = dtListTVP;
//TestName and FilePath is same for Phenome
args.FilePath = args.TestName;
//import data into database
await ImportDataAsync(result.CropCode, result.BrStationCode, result.SyncCode, result.CountryCode,
args, result.TVPColumns, result.TVPRows, result.TVPCells, result.TVPList, donorColumnName);
//get imported data
var ds = await GetDataAsync(new ExcelDataRequestArgs
{
TestID = args.TestID,
PageNumber = 1,
PageSize = 200
});
result.Total = ds.Total;
result.DataResult = ds.DataResult;
return(result);
}
}
