private static string Hash(byte[] bytes)
{
using (var sha1 = new SHA1CryptoServiceProvider())
{
return(BlockHash.SafeToBase64(sha1.ComputeHash(bytes)));
}
}
protected override void DoTest()
{
OpenDocument("Rat_plasma.sky");
RunUI(SkylineWindow.ShowAuditLog);
var auditLogForm = WaitForOpenForm <AuditLogForm>();
Assert.IsFalse(SkylineWindow.Document.Settings.DataSettings.AuditLogging);
RunUI(() => auditLogForm.EnableAuditLogging(true));
// Test that initial hash is correct
var expectedHash = BlockHash.SafeToBase64(new byte[]
{
0xFE, 0x0F, 0x0C, 0x54,
0xA0, 0x77, 0xE5, 0x8F,
0x77, 0xDC, 0x8B, 0xEE,
0x44, 0xB6, 0x65, 0x6D,
0x98, 0x31, 0xAA, 0x35
});
var actualHash = GetDocumentHash();
Assert.AreEqual(expectedHash, actualHash);
// Test that the hash is the same as if the document was simply read and hashed
// The document is really small (<20KB) so it's fine to read it all into memory
var bytes = File.ReadAllBytes(SkylineWindow.DocumentFilePath);
var hash = Hash(bytes);
Assert.AreEqual(expectedHash, hash);
// Make sure that there's an entry describing 1) number of nodes and 2) settings changes from default settings
Assert.AreEqual(1, SkylineWindow.Document.AuditLog.AuditLogEntries.Count);
if (!RecordNewestEntry())
{
RunUI(() => { LOG_ENTRY_MESSAGES[0].AssertEquals(SkylineWindow.Document.AuditLog.AuditLogEntries); });
}
// Modify and save the document so that the audit log gets saved
ChangeSettings(settings => settings.ChangePeptideFilter(filter => filter.ChangeExcludeNTermAAs(3))); // Change from 2 to 3
RunUI(() => SkylineWindow.SaveDocument());
RecordNewestEntry();
Assert.IsTrue(File.Exists(SrmDocument.GetAuditLogPath(SkylineWindow.DocumentFilePath)), "Audit log does not exist after saving document");
AssertEx.ValidateAuditLogAgainstSchema(File.ReadAllText(SrmDocument.GetAuditLogPath(SkylineWindow.DocumentFilePath)));
// Also validate an old document
AssertEx.ValidateAuditLogAgainstSchema(File.ReadAllText(TestFilesDir.GetTestPath("old_rat_plasma.skyl")));
// Modify document outside of skyline
var docPath = SkylineWindow.DocumentFilePath;
RunUI(() => SkylineWindow.NewDocument(true));
// Audit logging should be enabled since the previous settings will be used
Assert.IsTrue(SkylineWindow.Document.Settings.DataSettings.AuditLogging);
// Perform the following action manually:
// Settings > Peptide Settings -- Filter > Exclude N-Terminal AA's changed from "3" to "4"
var text = File.ReadAllText(docPath);
var match = Regex.Match(text, "<peptide_filter .*start=\"3\"");
Assert.IsTrue(match.Success);
Assert.IsFalse(match.NextMatch().Success);
var sb = new StringBuilder(text);
sb[match.Index + match.Length - 2] = '4';
File.WriteAllText(docPath, sb.ToString());
var oldRef = SkylineWindow.Document;
// Add an entry describing this change
OpenDocumentNoWait("Rat_plasma.sky");
var alert = WaitForOpenForm <AlertDlg>();
OkDialog(alert, alert.ClickYes);
var logForm = WaitForOpenForm <DocumentChangeLogEntryDlg>();
RunUI(() => { logForm.LogMessage = "Changed Exlude N-Terminal AA's from 3 to 4 manually"; });
OkDialog(logForm, logForm.OkDialog);
// Wait until document gets switched, otherwise WaitForDocumentLoaded will think that the document is already loaded
// since we're not waiting for the document to open (OpenDocumentNoWait)
WaitForCondition(() => !ReferenceEquals(oldRef, SkylineWindow.Document));
Assert.AreNotEqual(expectedHash, SkylineWindow.Document.DocumentHash); // If this wasn't the case the dialogs would never show up, but check anyways
WaitForDocumentLoaded();
RunUI(() => SkylineWindow.SaveDocument()); // Save so that hash in audit log matches document now
// Now audit logging should be enabled
Assert.IsTrue(SkylineWindow.Document.Settings.DataSettings.AuditLogging);
// Make sure the entry was actually added
Assert.AreEqual(3, SkylineWindow.Document.AuditLog.AuditLogEntries.Count);
// Check that this entry got saved and read correctly, we don't record here
if (!IsRecordMode)
{
RunUI(() => { LOG_ENTRY_MESSAGES[1].AssertEquals(SkylineWindow.Document.AuditLog.AuditLogEntries.Parent); });
}
if (!RecordNewestEntry())
{
RunUI(() => { LOG_ENTRY_MESSAGES[2].AssertEquals(SkylineWindow.Document.AuditLog.AuditLogEntries); });
}
var fasta = FastaImporter.ToFasta(PROTEINLIST_CLIPBOARD_TEXT, TextUtil.SEPARATOR_TSV);
RunDlg <EmptyProteinsDlg>(() => SkylineWindow.Paste(fasta), dlg => dlg.KeepEmptyProteins());
if (!RecordNewestEntry())
{
RunUI(() => { LOG_ENTRY_MESSAGES[3].AssertEquals(SkylineWindow.Document.AuditLog.AuditLogEntries); });
}
RunUI(SkylineWindow.ShowAuditLog);
var auditLogForm1 = WaitForOpenForm <AuditLogForm>();
RunUI(() => auditLogForm1.ChooseView(AuditLogStrings.AuditLogForm_MakeAuditLogForm_Undo_Redo));
AuditLogUtil.WaitForAuditLogForm(auditLogForm1);
// Show extra info for this entry
RunDlg <AuditLogExtraInfoForm>(() =>
{
Assert.AreEqual(4, auditLogForm1.DataGridView.RowCount);
var fastaRow = auditLogForm1.DataGridView.Rows[0];
var undoRedoCol = auditLogForm1.FindColumn(nameof(AuditLogRow.UndoRedoMessage));
Assert.IsNotNull(undoRedoCol);
var auditLogRowText = fastaRow.Cells[undoRedoCol.Index].Value as AuditLogRow.AuditLogRowText;
Assert.IsNotNull(auditLogRowText);
var col = auditLogForm1.DataGridView.Columns[undoRedoCol.Index] as AuditLogColumn;
Assert.IsNotNull(col);
Assert.IsTrue(col.ShouldDisplay(auditLogRowText, (int)AuditLogColumn.ImageIndex.extra_info));
col.Click(auditLogRowText, (int)AuditLogColumn.ImageIndex.extra_info);
}, form =>
{
var entry = SkylineWindow.DocumentUI.AuditLog.AuditLogEntries;
Assert.AreEqual(form.Message, entry.UndoRedo.ToString());
Assert.AreEqual(form.ExtraInfo, entry.ExtraInfo);
form.OkDialog();
});
// Disable audit logging, this should warn the user
RunDlg <AlertDlg>(() => { auditLogForm1.EnableAuditLogging(false); }, alertDlg => { alertDlg.ClickYes(); });
AuditLogUtil.WaitForAuditLogForm(auditLogForm1);
Assert.AreEqual(0, SkylineWindow.Document.AuditLog.AuditLogEntries.Count);
Assert.IsFalse(SkylineWindow.Document.Settings.DataSettings.AuditLogging);
// Re-open document without saving
RunUI(() => SkylineWindow.NewDocument(true));
OpenDocument("Rat_plasma.sky");
RunUI(SkylineWindow.ShowAuditLog);
var auditLogForm2 = WaitForOpenForm <AuditLogForm>();
RunUI(() => auditLogForm2.ChooseView(AuditLogStrings.AuditLogForm_MakeAuditLogForm_Undo_Redo));
AuditLogUtil.WaitForAuditLogForm(auditLogForm2);
RunUI(() =>
{
// Audit logging shold be back on and the entries should still be there
Assert.IsTrue(SkylineWindow.DocumentUI.Settings.DataSettings.AuditLogging);
Assert.AreEqual(3, SkylineWindow.DocumentUI.AuditLog.AuditLogEntries.Count);
});
// Disable again, this time save
RunDlg <AlertDlg>(() => { auditLogForm2.EnableAuditLogging(false); }, alertDlg => { alertDlg.ClickYes(); });
RunUI(() => SkylineWindow.SaveDocument());
// audit log should be gone
Assert.IsFalse(File.Exists(SrmDocument.GetAuditLogPath(SkylineWindow.DocumentFilePath)));
}