public string Get(Boolean IsGolden, string Tag, string AssayVersion, string SoftwareVersion, int AssayID)
{
long AssayDBID;
string AssayName = "";
//Assay name is specified
if (AssayID != -1)
{
using (var repo = new AssayRepository())
{
AssayDBID = repo.GetTypeIdWithID(AssayID);
AssayName = repo.GetAssayName(AssayID);
}
}
else
{
AssayDBID = -1;
}
var files = new List <Pair>();
if (Tag == "undefined")
{
Tag = "";
}
if (AssayVersion == "undefined")
{
AssayVersion = "";
}
if (SoftwareVersion == "undefined")
{
SoftwareVersion = "";
}
using (var repo = new CurveFilesRepository())
{
var tempContainer = repo.GetSpecifiedFile(IsGolden, Tag, AssayVersion, SoftwareVersion, AssayDBID);
if (tempContainer.Count <CurveFile>() == 0)
{
return(JsonConvert.SerializeObject("No Matching Curve File Found"));
}
else
{
var service = new CurveDataPointService();
var assayRepo = new AssayRepository();
foreach (var temp in tempContainer)
{
var container = service.getCurveData(temp.Data, temp.FullFileName);
if (AssayDBID == -1)
{
AssayName = assayRepo.GetAssayNameUsingTypeID(temp.AssayDBID);
}
files.Add(new Pair
{
AssayName = AssayName,
curveFile = temp,
data = container.dataSet,
FileType = container.FileType
});
}
}
}
return(JsonConvert.SerializeObject(files));
}
public string getAssayFromFile(Byte[] byteFile, string fileName)
{
var delim = new[] { '"' };
fileName = Regex.Unescape(fileName);
fileName = fileName.TrimEnd(delim).TrimStart(delim);
var tempPath = Path.GetTempPath();
var tempPathFile = Path.Combine(tempPath, fileName);
File.WriteAllBytes(tempPathFile, byteFile);
var repo = new AssayRepository();
var typeID = "";
using (var streamReader = new StreamReader(tempPathFile))
{
var firstLine = streamReader.ReadLine();
var secondLine = streamReader.ReadLine();
if (firstLine == null || secondLine == null)
{
return("Invalid");
}
var lowerFirstLine = firstLine.ToLower();
string[] seperatedValueFirst = lowerFirstLine.Split(',');
if (lowerFirstLine.Contains("sampleid") &&
(lowerFirstLine.Contains("testorderid") || lowerFirstLine.Contains("testorder id")))
{
//RPTool files
if (seperatedValueFirst.Length == 9)
{
List <string> firstColHolder = new List <string>();
var newStream = new StreamReader(tempPathFile);
while (!newStream.EndOfStream)
{
var newLine = newStream.ReadLine();
String[] seperatedVal = newLine.Split(',');
firstColHolder.Add(seperatedVal[0]);
}
//check the string with number
for (var index = 0; index < firstColHolder.Count; index++)
{
var charArr = firstColHolder[index].ToCharArray();
if (Char.IsNumber(charArr[0]))
{
typeID = charArr[0].ToString();
typeID = typeID.Insert(1, charArr[1].ToString());
var toReturn = repo.GetAssayNameUsingTypeID(Int32.Parse(typeID));
return(toReturn);
}
}
}
//TCycle and some versions of .curve
if (lowerFirstLine.Contains("cyclenum"))
{
String[] seperatedValue = secondLine.Split(',');
//TCYC
if (seperatedValue.Length != 15)
{
typeID = seperatedValue[7];
}
//.Curve
else
{
typeID = seperatedValue[6];
}
var toReturn = repo.GetAssayNameUsingTypeID(Int32.Parse(typeID));
//If assay are outdated
if (toReturn == "")
{
return("Invalid-Outdated");
}
return(toReturn);
}
//Fluorescence curve
else if (lowerFirstLine.Contains("rtf"))
{
String[] seperatedValue = secondLine.Split(';');
var Assay = seperatedValue[2];
String[] assayNumber = seperatedValue[2].Split(',');
var AssayDBID = assayNumber[0];
var toReturn = repo.GetAssayNameUsingTypeID(Int32.Parse(AssayDBID));
//If assay are outdated
if (toReturn == "")
{
return("Invalid-Outdated");
}
return(toReturn);
}
}
//validates FLUO.csv file
else if (seperatedValueFirst.Length == 19)
{
var typeIDStr = seperatedValueFirst[8];
var toReturn = repo.GetAssayNameUsingTypeID(Int32.Parse(typeIDStr));
//If assay are outdated
if (toReturn == "")
{
return("Invalid-Outdated");
}
return(toReturn);
}
//validates LUMI.csv file
else
{
var typeIDStr = "";
if (seperatedValueFirst.Length > 5)
{
if (seperatedValueFirst[5] != null)
{
var numOfDataPts = seperatedValueFirst[5];
typeIDStr = seperatedValueFirst[Int32.Parse(numOfDataPts) + 8];
}
else
{
return("Invalid");
}
var toReturn = repo.GetAssayNameUsingTypeID(Int32.Parse(typeIDStr));
//If assay are outdated
if (toReturn == "")
{
return("Invalid-Outdated");
}
return(toReturn);
}
}
}
return("Invalid");
}
