/// <summary>
/// Deserialize JSON into a FHIR AllergyIntolerance#Reaction
/// </summary>
public static void DeserializeJson(this AllergyIntolerance.ReactionComponent current, ref Utf8JsonReader reader, JsonSerializerOptions options)
{
string propertyName;
while (reader.Read())
{
if (reader.TokenType == JsonTokenType.EndObject)
{
return;
}
if (reader.TokenType == JsonTokenType.PropertyName)
{
propertyName = reader.GetString();
if (Hl7.Fhir.Serialization.FhirSerializerOptions.Debug)
{
Console.WriteLine($"AllergyIntolerance.ReactionComponent >>> AllergyIntolerance#Reaction.{propertyName}, depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
reader.Read();
current.DeserializeJsonProperty(ref reader, options, propertyName);
}
}
throw new JsonException($"AllergyIntolerance.ReactionComponent: invalid state! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
private void TheAllergyIntoleranceReactionShouldBeValid()
{
AllAllergyIntolerances.ForEach(allergy => {
if (allergy.Reaction != null)
{
allergy.Reaction.Count.ShouldBeLessThanOrEqualTo(1);
// git hub ref 173
// RMB 4/2/19 - debug for testing code should have been removed
// if (allergy.Reaction.Count == 0)
// {
// allergy.Reaction.Count.ShouldBe(1);
// }
// git hub ref 173
// RMB 23/1/19
if (allergy.Reaction.Any())
{
AllergyIntolerance.ReactionComponent reaction = allergy.Reaction[0];
if (reaction.Manifestation != null)
{
reaction.Manifestation.Count.ShouldBeLessThanOrEqualTo(1);
if (reaction.Manifestation.Count == 1)
{
if (reaction.Severity != null)
{
reaction.Severity.ShouldBeOfType <AllergyIntolerance.AllergyIntoleranceSeverity>($"AllergyIntolerance Severity is not a valid value within the value set {FhirConst.ValueSetSystems.kVsAllergyIntoleranceSeverity}");
var codableConcept = reaction.Manifestation.First();
var codingDisplay = codableConcept.Coding.First().Display;
// codingDisplay.ShouldBe("nullFlavor NI", "AllergyIntolerance.reaction.manifestation SHOULD be coded as the nullFlavor NI");
}
}
}
if (reaction.ExposureRoute != null)
{
reaction.ExposureRoute.Coding.First().System.Equals(FhirConst.CodeSystems.kCCSnomed);
}
reaction.Note.ShouldBeEmpty();
reaction.Onset.ShouldBeNull("Allergy Reaction Onset should be Null");
reaction.Substance.ShouldBeNull("Allergy Reaction Substance should be Null");
}
}
});
}
private void AddSeverityObservation(XElement element, AllergyIntolerance.ReactionComponent reaction)
{
if (element == null || reaction == null)
{
return;
}
foreach (var child in element.Elements())
{
switch (child.Name.LocalName)
{
case "value":
reaction.Severity = new AllergyIntoleranceSeverityParser().FromCda(child.Attribute("code")?.Value);
break;
}
}
}
private void AddReactionObservation(XElement element)
{
if (AllergyIntolerance == null || element == null)
{
return;
}
var reaction = new AllergyIntolerance.ReactionComponent();
foreach (var child in element.Elements())
{
switch (child.Name.LocalName)
{
case "id":
reaction.ElementId = FromXml(new IdentifierParser(), child)?.Value;
break;
case "effectiveTime":
reaction.OnsetElement = FromXml(new FhirDateTimeParser(), child.CdaElement("low"));
break;
case "value":
var manifestation = FromXml(new CodeableConceptParser(), child);
if (manifestation != null)
{
reaction.Manifestation.Add(manifestation);
}
break;
case "entryRelationship":
var obs = child.CdaElement("observation");
var templateId = obs.CdaElement("templateId")?.Attribute("root")?.Value;
if (templateId == "2.16.840.1.113883.10.20.22.4.8")
{
AddSeverityObservation(obs, reaction);
}
break;
}
}
if (reaction.Manifestation.Any())
{
AllergyIntolerance.Reaction.Add(reaction);
}
}
private void TheAllergyIntoleranceReactionShouldBeValid()
{
AllAllergyIntolerances.ForEach(allergy =>
{
if (allergy.Reaction != null)
{
allergy.Reaction.Count.ShouldBeLessThanOrEqualTo(1);
AllergyIntolerance.ReactionComponent reaction = allergy.Reaction[0];
if (reaction.Manifestation != null)
{
reaction.Manifestation.Count.ShouldBeLessThanOrEqualTo(1);
if (reaction.Manifestation.Count == 1)
{
if (reaction.Severity != null)
{
reaction.Severity.ShouldBeOfType <AllergyIntolerance.AllergyIntoleranceSeverity>($"AllergyIntolerance Severity is not a valid value within the value set {FhirConst.ValueSetSystems.kVsAllergyIntoleranceSeverity}");
var codableConcept = reaction.Manifestation.First();
var codingDisplay = codableConcept.Coding.First().Display;
codingDisplay.ShouldBe("nullFlavor NI", "AllergyIntolerance.reaction.manifestation SHOULD be coded as the nullFlavor NI");
}
}
}
if (reaction.ExposureRoute != null)
{
reaction.ExposureRoute.Coding.First().System.Equals(FhirConst.CodeSystems.kCCSnomed);
}
reaction.Note.ShouldBeEmpty();
reaction.Onset.ShouldBeNull();
reaction.Substance.ShouldBeNull();
}
});
}
/// <summary>
/// Deserialize JSON into a FHIR AllergyIntolerance#Reaction
/// </summary>
public static void DeserializeJsonProperty(this AllergyIntolerance.ReactionComponent current, ref Utf8JsonReader reader, JsonSerializerOptions options, string propertyName)
{
switch (propertyName)
{
case "substance":
current.Substance = new Hl7.Fhir.Model.CodeableConcept();
((Hl7.Fhir.Model.CodeableConcept)current.Substance).DeserializeJson(ref reader, options);
break;
case "manifestation":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"ReactionComponent error reading 'manifestation' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Manifestation = new List <CodeableConcept>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.CodeableConcept v_Manifestation = new Hl7.Fhir.Model.CodeableConcept();
v_Manifestation.DeserializeJson(ref reader, options);
current.Manifestation.Add(v_Manifestation);
if (!reader.Read())
{
throw new JsonException($"ReactionComponent error reading 'manifestation' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Manifestation.Count == 0)
{
current.Manifestation = null;
}
break;
case "description":
if (reader.TokenType == JsonTokenType.Null)
{
current.DescriptionElement = new FhirString();
reader.Skip();
}
else
{
current.DescriptionElement = new FhirString(reader.GetString());
}
break;
case "_description":
if (current.DescriptionElement == null)
{
current.DescriptionElement = new FhirString();
}
((Hl7.Fhir.Model.Element)current.DescriptionElement).DeserializeJson(ref reader, options);
break;
case "onset":
if (reader.TokenType == JsonTokenType.Null)
{
current.OnsetElement = new FhirDateTime();
reader.Skip();
}
else
{
current.OnsetElement = new FhirDateTime(reader.GetString());
}
break;
case "_onset":
if (current.OnsetElement == null)
{
current.OnsetElement = new FhirDateTime();
}
((Hl7.Fhir.Model.Element)current.OnsetElement).DeserializeJson(ref reader, options);
break;
case "severity":
if (reader.TokenType == JsonTokenType.Null)
{
current.SeverityElement = new Code <Hl7.Fhir.Model.AllergyIntolerance.AllergyIntoleranceSeverity>();
reader.Skip();
}
else
{
current.SeverityElement = new Code <Hl7.Fhir.Model.AllergyIntolerance.AllergyIntoleranceSeverity>(Hl7.Fhir.Utility.EnumUtility.ParseLiteral <Hl7.Fhir.Model.AllergyIntolerance.AllergyIntoleranceSeverity>(reader.GetString()));
}
break;
case "_severity":
if (current.SeverityElement == null)
{
current.SeverityElement = new Code <Hl7.Fhir.Model.AllergyIntolerance.AllergyIntoleranceSeverity>();
}
((Hl7.Fhir.Model.Element)current.SeverityElement).DeserializeJson(ref reader, options);
break;
case "exposureRoute":
current.ExposureRoute = new Hl7.Fhir.Model.CodeableConcept();
((Hl7.Fhir.Model.CodeableConcept)current.ExposureRoute).DeserializeJson(ref reader, options);
break;
case "note":
if ((reader.TokenType != JsonTokenType.StartArray) || (!reader.Read()))
{
throw new JsonException($"ReactionComponent error reading 'note' expected StartArray, found {reader.TokenType}! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
current.Note = new List <Annotation>();
while (reader.TokenType != JsonTokenType.EndArray)
{
Hl7.Fhir.Model.Annotation v_Note = new Hl7.Fhir.Model.Annotation();
v_Note.DeserializeJson(ref reader, options);
current.Note.Add(v_Note);
if (!reader.Read())
{
throw new JsonException($"ReactionComponent error reading 'note' array, read failed! depth: {reader.CurrentDepth}, pos: {reader.BytesConsumed}");
}
if (reader.TokenType == JsonTokenType.EndObject)
{
reader.Read();
}
}
if (current.Note.Count == 0)
{
current.Note = null;
}
break;
// Complex: reaction, Export: ReactionComponent, Base: BackboneElement
default:
((Hl7.Fhir.Model.BackboneElement)current).DeserializeJsonProperty(ref reader, options, propertyName);
break;
}
}
/// <summary>
/// Serialize a FHIR AllergyIntolerance#Reaction into JSON
/// </summary>
public static void SerializeJson(this AllergyIntolerance.ReactionComponent current, Utf8JsonWriter writer, JsonSerializerOptions options, bool includeStartObject = true)
{
if (includeStartObject)
{
writer.WriteStartObject();
}
// Component: AllergyIntolerance#Reaction, Export: ReactionComponent, Base: BackboneElement (BackboneElement)
((Hl7.Fhir.Model.BackboneElement)current).SerializeJson(writer, options, false);
if (current.Substance != null)
{
writer.WritePropertyName("substance");
current.Substance.SerializeJson(writer, options);
}
if ((current.Manifestation != null) && (current.Manifestation.Count != 0))
{
writer.WritePropertyName("manifestation");
writer.WriteStartArray();
foreach (CodeableConcept val in current.Manifestation)
{
val.SerializeJson(writer, options, true);
}
writer.WriteEndArray();
}
if (current.DescriptionElement != null)
{
if (!string.IsNullOrEmpty(current.DescriptionElement.Value))
{
writer.WriteString("description", current.DescriptionElement.Value);
}
if (current.DescriptionElement.HasExtensions() || (!string.IsNullOrEmpty(current.DescriptionElement.ElementId)))
{
JsonStreamUtilities.SerializeExtensionList(writer, options, "_description", false, current.DescriptionElement.Extension, current.DescriptionElement.ElementId);
}
}
if (current.OnsetElement != null)
{
if (!string.IsNullOrEmpty(current.OnsetElement.Value))
{
writer.WriteString("onset", current.OnsetElement.Value);
}
if (current.OnsetElement.HasExtensions() || (!string.IsNullOrEmpty(current.OnsetElement.ElementId)))
{
JsonStreamUtilities.SerializeExtensionList(writer, options, "_onset", false, current.OnsetElement.Extension, current.OnsetElement.ElementId);
}
}
if (current.SeverityElement != null)
{
if (current.SeverityElement.Value != null)
{
writer.WriteString("severity", Hl7.Fhir.Utility.EnumUtility.GetLiteral(current.SeverityElement.Value));
}
if (current.SeverityElement.HasExtensions() || (!string.IsNullOrEmpty(current.SeverityElement.ElementId)))
{
JsonStreamUtilities.SerializeExtensionList(writer, options, "_severity", false, current.SeverityElement.Extension, current.SeverityElement.ElementId);
}
}
if (current.ExposureRoute != null)
{
writer.WritePropertyName("exposureRoute");
current.ExposureRoute.SerializeJson(writer, options);
}
if ((current.Note != null) && (current.Note.Count != 0))
{
writer.WritePropertyName("note");
writer.WriteStartArray();
foreach (Annotation val in current.Note)
{
val.SerializeJson(writer, options, true);
}
writer.WriteEndArray();
}
if (includeStartObject)
{
writer.WriteEndObject();
}
}
