public void test_Model_getRules() { Rule ar = new AlgebraicRule(2, 4); Rule scr = new AssignmentRule(2, 4); Rule cvr = new AssignmentRule(2, 4); Rule pr = new AssignmentRule(2, 4); scr.setVariable("r2"); cvr.setVariable("r3"); pr.setVariable("r4"); ar.setFormula("x + 1"); scr.setFormula("k * t/(1 + k)"); cvr.setFormula("0.10 * t"); pr.setFormula("k3/k2"); M.addRule(ar); M.addRule(scr); M.addRule(cvr); M.addRule(pr); assertTrue(M.getNumRules() == 4); ar = M.getRule(0); scr = M.getRule(1); cvr = M.getRule(2); pr = M.getRule(3); assertTrue(("x + 1" == ar.getFormula())); assertTrue(("k * t/(1 + k)" == scr.getFormula())); assertTrue(("0.10 * t" == cvr.getFormula())); assertTrue(("k3/k2" == pr.getFormula())); }
public void test_AlgebraicRule() { AlgebraicRule ar = new AlgebraicRule(2, 4); assertEquals(true, ar.hasRequiredAttributes()); ar = null; }
public void AlgebraicRuleElement(Hashtable attrs) { AlgebraicRule algebraicRule = new AlgebraicRule(this.model); this.model.listOfRules.Add(algebraicRule); elementStack.Push(algebraicRule); }
public void test_Rule_setVariable3() { Rule R1 = new AlgebraicRule(1, 2); int i = R1.setVariable("r"); assertTrue(i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE); assertEquals(false, R1.isSetVariable()); R1 = null; }
public void test_AlgebraicRule_L1() { AlgebraicRule ar = new AlgebraicRule(1, 2); assertEquals(false, (ar.hasRequiredAttributes())); ar.setFormula("ar"); assertEquals(true, ar.hasRequiredAttributes()); ar = null; }
public void test_AlgebraicRule() { AlgebraicRule ar = new AlgebraicRule(2, 4); assertEquals(false, (ar.hasRequiredElements())); ar.setMath(libsbml.parseFormula("ar")); assertEquals(true, ar.hasRequiredElements()); ar = null; }
public void test_AlgebraicRule_parent_create() { Model m = new Model(2, 4); AlgebraicRule r = m.createAlgebraicRule(); ListOf lo = m.getListOfRules(); assertTrue(lo == m.getRule(0).getParentSBMLObject()); assertTrue(lo == r.getParentSBMLObject()); assertTrue(m == lo.getParentSBMLObject()); }
public void test_AlgebraicRule_createWithMath() { ASTNode math = libsbml.parseFormula("1 + 1"); Rule ar = new AlgebraicRule(2, 4); ar.setMath(math); assertTrue(ar.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE); assertTrue(ar.getMetaId() == ""); assertTrue(("1 + 1" == ar.getFormula())); assertTrue(ar.getMath() != math); ar = null; }
public void test_Model_addRules() { Rule r1 = new AlgebraicRule(2, 4); Rule r2 = new AssignmentRule(2, 4); Rule r3 = new RateRule(2, 4); r2.setVariable("r2"); r3.setVariable("r3"); r1.setMath(libsbml.parseFormula("2")); r2.setMath(libsbml.parseFormula("2")); r3.setMath(libsbml.parseFormula("2")); M.addRule(r1); M.addRule(r2); M.addRule(r3); assertTrue(M.getNumRules() == 3); }
public void test_AlgebraicRule_createWithFormula() { ASTNode math; string formula; Rule ar = new AlgebraicRule(2, 4); ar.setFormula("1 + 1"); assertTrue(ar.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE); assertTrue(ar.getMetaId() == ""); math = ar.getMath(); assertTrue(math != null); formula = libsbml.formulaToString(math); assertTrue(formula != null); assertTrue(("1 + 1" == formula)); assertTrue((formula == ar.getFormula())); ar = null; }
public void test_AlgebraicRule_ancestor_create() { Model m = new Model(2, 4); AlgebraicRule r = m.createAlgebraicRule(); ListOf lo = m.getListOfRules(); assertTrue(r.getAncestorOfType(libsbml.SBML_MODEL) == m); assertTrue(r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo); assertTrue(r.getAncestorOfType(libsbml.SBML_DOCUMENT) == null); assertTrue(r.getAncestorOfType(libsbml.SBML_EVENT) == null); Rule obj = m.getRule(0); assertTrue(obj.getAncestorOfType(libsbml.SBML_MODEL) == m); assertTrue(obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo); assertTrue(obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null); assertTrue(obj.getAncestorOfType(libsbml.SBML_EVENT) == null); }
public void test_AlgebraicRule_createWithNS() { XMLNamespaces xmlns = new XMLNamespaces(); xmlns.add("http://www.sbml.org", "testsbml"); SBMLNamespaces sbmlns = new SBMLNamespaces(2, 3); sbmlns.addNamespaces(xmlns); Rule r = new AlgebraicRule(sbmlns); assertTrue(r.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE); assertTrue(r.getMetaId() == ""); assertTrue(r.getNotes() == null); assertTrue(r.getAnnotation() == null); assertTrue(r.getLevel() == 2); assertTrue(r.getVersion() == 3); assertTrue(r.getNamespaces() != null); assertTrue(r.getNamespaces().getLength() == 2); r = null; }
static void testClone(SBase s) { string ename = s.getElementName(); SBase c = s.clone(); if (c is Compartment) { Compartment x = (s as Compartment).clone(); c = x; } else if (c is CompartmentType) { CompartmentType x = (s as CompartmentType).clone(); c = x; } else if (c is Constraint) { Constraint x = (s as Constraint).clone(); c = x; } else if (c is Delay) { Delay x = (s as Delay).clone(); c = x; } else if (c is Event) { Event x = (s as Event).clone(); c = x; } else if (c is EventAssignment) { EventAssignment x = (s as EventAssignment).clone(); c = x; } else if (c is FunctionDefinition) { FunctionDefinition x = (s as FunctionDefinition).clone(); c = x; } else if (c is InitialAssignment) { InitialAssignment x = (s as InitialAssignment).clone(); c = x; } else if (c is KineticLaw) { KineticLaw x = (s as KineticLaw).clone(); c = x; } // currently return type of ListOf::clone() is SBase else if (c is ListOf) { SBase x = (s as ListOf).clone(); c = x; } else if (c is Model) { Model x = (s as Model).clone(); c = x; } else if (c is Parameter) { Parameter x = (s as Parameter).clone(); c = x; } else if (c is Reaction) { Reaction x = (s as Reaction).clone(); c = x; } else if (c is AlgebraicRule) { AlgebraicRule x = (s as AlgebraicRule).clone(); c = x; } else if (c is AssignmentRule) { AssignmentRule x = (s as AssignmentRule).clone(); c = x; } else if (c is RateRule) { RateRule x = (s as RateRule).clone(); c = x; } else if (c is SBMLDocument) { SBMLDocument x = (s as SBMLDocument).clone(); c = x; } else if (c is Species) { Species x = (s as Species).clone(); c = x; } else if (c is SpeciesReference) { SpeciesReference x = (s as SpeciesReference).clone(); c = x; } else if (c is SpeciesType) { SpeciesType x = (s as SpeciesType).clone(); c = x; } else if (c is SpeciesReference) { SpeciesReference x = (s as SpeciesReference).clone(); c = x; } else if (c is StoichiometryMath) { StoichiometryMath x = (s as StoichiometryMath).clone(); c = x; } else if (c is Trigger) { Trigger x = (s as Trigger).clone(); c = x; } else if (c is Unit) { Unit x = (s as Unit).clone(); c = x; } else if (c is UnitDefinition) { UnitDefinition x = (s as UnitDefinition).clone(); c = x; } else if (c is ListOfCompartmentTypes) { ListOfCompartmentTypes x = (s as ListOfCompartmentTypes).clone(); c = x; } else if (c is ListOfCompartments) { ListOfCompartments x = (s as ListOfCompartments).clone(); c = x; } else if (c is ListOfConstraints) { ListOfConstraints x = (s as ListOfConstraints).clone(); c = x; } else if (c is ListOfEventAssignments) { ListOfEventAssignments x = (s as ListOfEventAssignments).clone(); c = x; } else if (c is ListOfEvents) { ListOfEvents x = (s as ListOfEvents).clone(); c = x; } else if (c is ListOfFunctionDefinitions) { ListOfFunctionDefinitions x = (s as ListOfFunctionDefinitions).clone(); c = x; } else if (c is ListOfInitialAssignments) { ListOfInitialAssignments x = (s as ListOfInitialAssignments).clone(); c = x; } else if (c is ListOfParameters) { ListOfParameters x = (s as ListOfParameters).clone(); c = x; } else if (c is ListOfReactions) { ListOfReactions x = (s as ListOfReactions).clone(); c = x; } else if (c is ListOfRules) { ListOfRules x = (s as ListOfRules).clone(); c = x; } else if (c is ListOfSpecies) { ListOfSpecies x = (s as ListOfSpecies).clone(); c = x; } else if (c is ListOfSpeciesReferences) { ListOfSpeciesReferences x = (s as ListOfSpeciesReferences).clone(); c = x; } else if (c is ListOfSpeciesTypes) { ListOfSpeciesTypes x = (s as ListOfSpeciesTypes).clone(); c = x; } else if (c is ListOfUnitDefinitions) { ListOfUnitDefinitions x = (s as ListOfUnitDefinitions).clone(); c = x; } else if (c is ListOfUnits) { ListOfUnits x = (s as ListOfUnits).clone(); c = x; } else { ERR("[testClone] Error: (" + ename + ") : clone() failed."); return; } if (c == null) { ERR("[testClone] Error: (" + ename + ") : clone() failed."); return; } string enameClone = c.getElementName(); if (ename == enameClone) { //Console.Out.WriteLine("[testClone] OK: (" + ename + ") clone(" + enameClone + ") : type match."); OK(); } else { ERR("[testClone] Error: (" + ename + ") clone(" + enameClone + ") : type mismatch."); } }