public void BuildAPSIMXRuntimeEnvironmentWithRuntimePackage()
{
string binDirectory = Path.GetDirectoryName(Assembly.GetExecutingAssembly().Location);
string runtimeDirectory = Path.Combine(binDirectory, "ApsimX-2473");
// Remove old runtime directory if it exists.
if (Directory.Exists(runtimeDirectory))
{
Directory.Delete(runtimeDirectory, true);
}
// Build the new runtime environment.
APSIMSpecification simulation = GetDefaultSimulationSpec();
List <APSIMSpecification> simulations = new List <APSIMSpecification>();
RuntimeEnvironment environment = new RuntimeEnvironment
{
APSIMxBuildNumber = 2473 // issue number that was resovled.
};
simulations.Add(simulation);
RunYPJob job = new RunYPJob(simulations, environment);
// Make sure it is built correctly.
Assert.IsTrue(Directory.Exists(runtimeDirectory));
string modelsExe = Path.Combine(runtimeDirectory, "Bin", "Models.exe");
Assert.IsTrue(File.Exists(modelsExe));
// Remove newly created runtime directory
Directory.Delete(runtimeDirectory, true);
}
public void RunAPSIMXGetOutputs()
{
APSIMSpecification simulation = GetDefaultSimulationSpec();
List <APSIMSpecification> simulations = new List <APSIMSpecification>();
simulations.Add(simulation);
RuntimeEnvironment environment = new RuntimeEnvironment
{
APSIMxBuildNumber = 2473 // issue number that was resovled.
};
RunYPJob job = new RunYPJob(simulations, environment);
IJobRunner runner = new JobRunnerAsync();
runner.Run(job, wait: true);
// Make sure we don't have an error.
Assert.AreEqual(job.Errors.Count, 0);
// Make sure we have a daily output table.
Assert.AreEqual(job.Outputs.Tables.Count, 1);
Assert.AreEqual(job.Outputs.Tables[0].TableName, "Daily");
double[] biomass = DataTableUtilities.GetColumnAsDoubles(job.Outputs.Tables[0], "Wheat.Aboveground.Wt");
Assert.IsTrue(MathUtilities.Max(biomass) > 5); // make sure something is growing.
}
public void APSIMSpecificationTests_SWBoundedtoCLL()
{
APSIMSpecification spec = new APSIMSpecification()
{
Name = "NameOfPaddock",
StartDate = new DateTime(2016, 4, 1),
EndDate = new DateTime(2016, 12, 1),
NowDate = new DateTime(2016, 7, 1),
StationNumber = 41023,
RunType = APSIMSpecification.RunTypeEnum.Normal,
StubbleMass = 100,
StubbleType = "Wheat",
Samples = new List <Sample>()
{
new Sample()
{
Thickness = new double[] { 100, 300, 300, 300 },
NO3 = new double[] { 34, 6.9, 3.1, 1.8 },
NH4 = new double[] { 5.5, 1.8, 1.8, 1.5 },
SW = new double[] { 0.13, 0.18, 0.20, 0.24 },
SWUnits = Sample.SWUnitsEnum.Gravimetric,
}
},
SoilPath = "Soils/Australia/Victoria/Wimmera/Clay (Rupanyup North No742)",
Management = new List <Management>()
{
new Sow()
{
Crop = "Wheat",
Date = new DateTime(2016, 5, 1),
}
}
};
string workingDirectory = Path.GetTempFileName();
File.Delete(workingDirectory);
Directory.CreateDirectory(workingDirectory);
string apsimFileName = APSIMFiles.Create(spec, workingDirectory, "test.apsim");
XmlDocument doc = new XmlDocument();
doc.Load(apsimFileName);
// The third layer SW should be changed.
XmlNode swNode = XmlUtilities.Find(doc.DocumentElement, "NameOfPaddock/Paddock/Soil/Sample/SW");
double[] SW = MathUtilities.StringsToDoubles(XmlUtilities.Values(swNode, "double"));
Assert.AreEqual(SW[0], 0.13, 0.0001);
Assert.AreEqual(SW[1], 0.18, 0.0001);
Assert.AreEqual(SW[2], 0.21880064829821716, 0.0001); // bounded to CLL
Assert.AreEqual(SW[3], 0.24, 0.0001);
Directory.Delete(workingDirectory, recursive: true);
}
public void APSIMSpecificationTestss_ConaUCorrected()
{
// Using a northern soil in southern australia should change the
// CONA and U values to southern australian ones.
APSIMSpecification spec = new APSIMSpecification()
{
Name = "NameOfPaddock",
StartDate = new DateTime(2016, 4, 1),
EndDate = new DateTime(2016, 12, 1),
NowDate = new DateTime(2016, 7, 1),
StationNumber = 77007, // Birchip post office - victoria.
RunType = APSIMSpecification.RunTypeEnum.Normal,
StubbleMass = 100,
StubbleType = "Wheat",
Samples = new List <Sample>()
{
new Sample()
{
Thickness = new double[] { 100, 300, 300, 300 },
NO3 = new double[] { 34, 6.9, 3.1, 1.8 },
NH4 = new double[] { 5.5, 1.8, 1.8, 1.5 },
SW = new double[] { 0.13, 0.18, 0.20, 0.24 },
SWUnits = Sample.SWUnitsEnum.Gravimetric,
}
},
SoilPath = "Soils/Australia/Queensland/Darling Downs and Granite Belt/Black Vertosol (Formartin No622-YP)",
Management = new List <Management>()
{
new Sow()
{
Crop = "Wheat",
Date = new DateTime(2016, 5, 1),
}
}
};
string workingDirectory = Path.GetTempFileName();
File.Delete(workingDirectory);
Directory.CreateDirectory(workingDirectory);
string apsimFileName = APSIMFiles.Create(spec, workingDirectory, "test.apsim");
XmlDocument doc = new XmlDocument();
doc.Load(apsimFileName);
// CONA and U should be for southern australia
Assert.AreEqual(XmlUtilities.Value(doc.DocumentElement, "NameOfPaddock/Paddock/Soil/SoilWater/SummerU"), "6");
Assert.AreEqual(XmlUtilities.Value(doc.DocumentElement, "NameOfPaddock/Paddock/Soil/SoilWater/SummerCona"), "3.5");
Assert.AreEqual(XmlUtilities.Value(doc.DocumentElement, "NameOfPaddock/Paddock/Soil/SoilWater/WinterU"), "2");
Assert.AreEqual(XmlUtilities.Value(doc.DocumentElement, "NameOfPaddock/Paddock/Soil/SoilWater/WinterCona"), "2");
Directory.Delete(workingDirectory, recursive: true);
}
public void APSIMSpecificationTests_CreateJobFromApsimSpecXML()
{
APSIMSpecification spec = new APSIMSpecification()
{
Name = "NameOfPaddock",
StartDate = new DateTime(2016, 4, 1),
EndDate = new DateTime(2016, 12, 1),
NowDate = new DateTime(2016, 7, 1),
StationNumber = 41023,
RunType = APSIMSpecification.RunTypeEnum.Normal,
StubbleMass = 100,
StubbleType = "Wheat",
Samples = new List <Sample>()
{
new Sample()
{
Thickness = new double[] { 100, 300, 300, 300 },
NO3 = new double[] { 34, 6.9, 3.1, 1.8 },
NH4 = new double[] { 5.5, 1.8, 1.8, 1.5 },
SW = new double[] { 0.13, 0.18, 0.20, 0.24 },
SWUnits = Sample.SWUnitsEnum.Gravimetric,
}
},
SoilPath = "Soils/Australia/Victoria/Wimmera/Clay (Rupanyup North No742)",
Management = new List <Management>()
{
new Sow()
{
Crop = "Wheat",
Date = new DateTime(2016, 5, 1),
}
}
};
List <APSIMSpecification> simulations = new List <APSIMSpecification>()
{
spec
};
RuntimeEnvironment environment = new RuntimeEnvironment
{
APSIMRevision = "Apsim7.8-R4013"
};
string xml = XmlUtilities.Serialise(simulations, true);
RunYPJob job = new RunYPJob(xml, environment);
Assert.IsNotNull(job.GetNextJobToRun());
}
public void APSIMSpecificationTests_SoilLandscapeGrid()
{
// Make sure we can reference a soil and landscape grid soil.
APSIMSpecification spec = new APSIMSpecification()
{
Name = "NameOfPaddock",
StartDate = new DateTime(2016, 4, 1),
EndDate = new DateTime(2016, 12, 1),
NowDate = new DateTime(2016, 7, 1),
StationNumber = 77007, // Birchip post office - victoria.
RunType = APSIMSpecification.RunTypeEnum.Normal,
StubbleMass = 100,
StubbleType = "Wheat",
Samples = new List <Sample>()
{
new Sample()
{
Thickness = new double[] { 100, 300, 300, 300 },
NO3 = new double[] { 34, 6.9, 3.1, 1.8 },
NH4 = new double[] { 5.5, 1.8, 1.8, 1.5 },
SW = new double[] { 0.13, 0.18, 0.20, 0.24 },
SWUnits = Sample.SWUnitsEnum.Gravimetric,
}
},
SoilPath = "http://ternsoils.nexus.csiro.au:8080/ASRISApi/api/APSIM/getApsoilTypeMap?longitude=147&latitude=-29.5&numToReturn=0",
Management = new List <Management>()
{
new Sow()
{
Crop = "Wheat",
Date = new DateTime(2016, 5, 1),
}
}
};
string workingDirectory = Path.GetTempFileName();
File.Delete(workingDirectory);
Directory.CreateDirectory(workingDirectory);
string apsimFileName = APSIMFiles.Create(spec, workingDirectory, "test.apsim");
XmlDocument doc = new XmlDocument();
doc.Load(apsimFileName);
Assert.AreEqual(XmlUtilities.Value(doc.DocumentElement, "NameOfPaddock/Paddock/Soil/NearestTown"), "Walgett, NSW 2400");
Directory.Delete(workingDirectory, recursive: true);
}
private static APSIMSpecification GetDefaultSimulationSpec()
{
Sample sample = new Sample
{
Thickness = new double[] { 100, 300, 300, 300 },
NO3 = new double[] { 34, 6.9, 3.1, 1.8 },
NH4 = new double[] { 5.5, 1.8, 1.8, 1.5 },
SW = new double[] { 0.3, 0.3, 0.30, 0.24 },
SWUnits = Sample.SWUnitsEnum.Gravimetric
};
Sow sow = new Sow
{
Crop = "Wheat",
Cultivar = "Hartog",
RowSpacing = 100,
SeedDepth = 30,
SowingDensity = 100,
Date = new DateTime(2016, 5, 1)
};
APSIMSpecification simulation = new APSIMSpecification
{
Name = "NameOfPaddock",
StartDate = new DateTime(2016, 4, 1),
EndDate = new DateTime(2016, 7, 1),
NowDate = new DateTime(2016, 7, 1),
RunType = APSIMSpecification.RunTypeEnum.Normal,
LongtermStartYear = 2000,
DailyOutput = true,
StationNumber = 41023,
StubbleMass = 100,
StubbleType = "Wheat",
WriteDepthFile = true,
Samples = new List <Sample>()
};
simulation.Samples.Add(sample);
simulation.SoilPath = "Soils/Australia/Victoria/Wimmera/Clay (Rupanyup North No742)";
simulation.Management = new List <Management>();
simulation.Management.Add(sow);
return(simulation);
}
public void APSIMSpecificationTests_MultipleSimulations()
{
// Do a normal single simulation and a long term patched run
// This mimics a crop report.
// Make sure the factorial factors are right. We have had the bug
// where ThisYearDaily data isn't produced - sim wasn't run because
// it wasn't in factorial factors.
APSIMSpecification shortSimSpec = CreateAPSIMSpecification();
APSIMSpecification longtermPatchedSim = CreateAPSIMSpecification();
longtermPatchedSim.Name = "NameOfPaddock2";
longtermPatchedSim.RunType = APSIMSpecification.RunTypeEnum.LongTermPatched;
longtermPatchedSim.LongtermStartYear = 1957;
List <APSIMSpecification> simulations = new List <APSIMSpecification>()
{
shortSimSpec,
longtermPatchedSim
};
string workingDirectory = Path.GetTempFileName();
File.Delete(workingDirectory);
Directory.CreateDirectory(workingDirectory);
string apsimFileName = APSIMFiles.Create(simulations, workingDirectory, "test.apsim");
XmlDocument doc = new XmlDocument();
doc.Load(apsimFileName);
// Check the factorial factors
XmlNode factorialsNode = XmlUtilities.Find(doc.DocumentElement, "Factorials");
Assert.AreEqual(XmlUtilities.Value(factorialsNode, "active"), "1");
Assert.AreEqual(XmlUtilities.Value(factorialsNode.ChildNodes[1], "targets/Target"), "/Simulations/NameOfPaddock/Met");
Assert.AreEqual(XmlUtilities.Value(factorialsNode.ChildNodes[2], "targets/Target"), "/Simulations/NameOfPaddock2/Met");
Directory.Delete(workingDirectory, recursive: true);
}
public void BuildAPSIMRuntimeEnvironmentWithRuntimePackage()
{
string binDirectory = Path.GetDirectoryName(Assembly.GetExecutingAssembly().Location);
string runtimeDirectory = Path.Combine(binDirectory, "Apsim7.8-R4000-Testing");
// Remove old runtime directory if it exists.
if (Directory.Exists(runtimeDirectory))
{
Directory.Delete(runtimeDirectory, true);
}
// Build the new runtime environment.
APSIMSpecification simulation = GetDefaultSimulationSpec();
List <APSIMSpecification> simulations = new List <APSIMSpecification>();
RuntimeEnvironment environment = new RuntimeEnvironment
{
APSIMRevision = "Apsim7.8-R4000",
RuntimePackage = "Testing"
};
simulations.Add(simulation);
RunYPJob job = new RunYPJob(simulations, environment);
// Make sure it is built correctly.
Assert.IsTrue(Directory.Exists(runtimeDirectory));
string apsimExe = Path.Combine(runtimeDirectory, "Temp", "Model", "Apsim.exe");
Assert.IsTrue(File.Exists(apsimExe));
string testFileName = Path.Combine(runtimeDirectory, "Temp", "Model", "Test.txt");
Assert.AreEqual(File.ReadAllText(testFileName), "Test contents");
// Remove newly created runtime directory
Directory.Delete(runtimeDirectory, true);
}
public void RunAPSIMGetError()
{
APSIMSpecification simulation = GetDefaultSimulationSpec();
(simulation.Management[0] as Sow).Cultivar = string.Empty;
List <APSIMSpecification> simulations = new List <APSIMSpecification>();
simulations.Add(simulation);
RuntimeEnvironment environment = new RuntimeEnvironment
{
APSIMRevision = "Apsim7.8-R4013"
};
RunYPJob job = new RunYPJob(simulations, environment);
IJobRunner runner = new JobRunnerAsync();
runner.Run(job, wait: true);
// Make sure we have an error.
Assert.AreEqual(job.Errors.Count, 1);
Assert.AreEqual(job.Errors[0], "Cannot sow plant - : Cultivar not specified\r\n Component name: Paddock.Wheat");
}
public void RunAPSIMGetOutputs()
{
APSIMSpecification simulation = GetDefaultSimulationSpec();
List <APSIMSpecification> simulations = new List <APSIMSpecification>();
simulations.Add(simulation);
RuntimeEnvironment environment = new RuntimeEnvironment
{
APSIMRevision = "Apsim7.8-R4013"
};
RunYPJob job = new RunYPJob(simulations, environment);
IJobRunner runner = new JobRunnerAsync();
runner.Run(job, wait: true);
// Make sure we don't have an error.
Assert.AreEqual(job.Errors.Count, 0);
// Make sure we have a daily output table.
Assert.AreEqual(job.Outputs.Tables.Count, 3);
Assert.AreEqual(job.Outputs.Tables[0].TableName, "Summary");
Assert.AreEqual(job.Outputs.Tables[1].TableName, "YieldProphetDaily");
Assert.AreEqual(job.Outputs.Tables[1].Rows.Count, 92);
double[] biomass = DataTableUtilities.GetColumnAsDoubles(job.Outputs.Tables[1], "biomass");
Assert.IsTrue(MathUtilities.Max(biomass) > 20.0); // make sure something is growing.
// Make sure we have a depth table.
Assert.AreEqual(job.Outputs.Tables[2].TableName, "YieldProphetDepth");
Assert.AreEqual(job.Outputs.Tables[2].Rows.Count, 8);
double[] sw = DataTableUtilities.GetColumnAsDoubles(job.Outputs.Tables[2], "sw");
Assert.IsTrue(MathUtilities.Max(sw) > 0.0); // make sure there are sw values
}
private static APSIMSpecification CreateAPSIMSpecification()
{
APSIMSpecification spec = new APSIMSpecification()
{
Name = "NameOfPaddock",
StartDate = new DateTime(2016, 4, 1),
EndDate = new DateTime(2017, 12, 1),
NowDate = new DateTime(2017, 7, 1),
StationNumber = 77007, // Birchip post office - victoria.
RunType = APSIMSpecification.RunTypeEnum.Normal,
StubbleMass = 100,
StubbleType = "Wheat",
ObservedData = new System.Data.DataTable("ObsData"),
Samples = new List <Sample>()
{
new Sample()
{
Thickness = new double[] { 100, 300, 300, 300 },
NO3 = new double[] { 34, 6.9, 3.1, 1.8 },
NH4 = new double[] { 5.5, 1.8, 1.8, 1.5 },
SW = new double[] { 0.13, 0.18, 0.20, 0.24 },
SWUnits = Sample.SWUnitsEnum.Gravimetric,
}
},
SoilPath = "Soils/Australia/Queensland/Darling Downs and Granite Belt/Black Vertosol (Formartin No622-YP)",
Management = new List <Management>()
{
new Sow()
{
Crop = "Wheat",
Date = new DateTime(2016, 5, 1),
},
new Fertilise()
{
Date = new DateTime(2016, 5, 1),
Amount = 50
},
new ResetWater()
{
Date = new DateTime(2016, 5, 1),
},
new ResetNitrogen()
{
Date = new DateTime(2016, 5, 1),
},
new ResetSurfaceOrganicMatter()
{
Date = new DateTime(2016, 5, 1),
},
new Fertilise()
{
Date = new DateTime(2016, 8, 1),
Amount = 55
},
new Sow()
{
Crop = "Barley",
Date = new DateTime(2017, 6, 1),
},
new Fertilise()
{
Date = new DateTime(2017, 6, 1),
Amount = 50
}
}
};
spec.ObservedData.Columns.Add("Date", typeof(DateTime));
return(spec);
}
public void APSIMSpecificationTests_MultiYearRunNormal()
{
// Do a normal multi year run
APSIMSpecification spec = new APSIMSpecification()
{
Name = "NameOfPaddock",
StartDate = new DateTime(2016, 4, 1),
EndDate = new DateTime(2017, 12, 1),
NowDate = new DateTime(2017, 7, 1),
StationNumber = 77007, // Birchip post office - victoria.
RunType = APSIMSpecification.RunTypeEnum.Normal,
StubbleMass = 100,
StubbleType = "Wheat",
Samples = new List <Sample>()
{
new Sample()
{
Thickness = new double[] { 100, 300, 300, 300 },
NO3 = new double[] { 34, 6.9, 3.1, 1.8 },
NH4 = new double[] { 5.5, 1.8, 1.8, 1.5 },
SW = new double[] { 0.13, 0.18, 0.20, 0.24 },
SWUnits = Sample.SWUnitsEnum.Gravimetric,
}
},
SoilPath = "Soils/Australia/Queensland/Darling Downs and Granite Belt/Black Vertosol (Formartin No622-YP)",
Management = new List <Management>()
{
new Sow()
{
Crop = "Wheat",
Date = new DateTime(2016, 5, 1),
},
new Fertilise()
{
Date = new DateTime(2016, 5, 1),
Amount = 50
},
new ResetWater()
{
Date = new DateTime(2016, 5, 1),
},
new ResetNitrogen()
{
Date = new DateTime(2016, 5, 1),
},
new ResetSurfaceOrganicMatter()
{
Date = new DateTime(2016, 5, 1),
},
new Fertilise()
{
Date = new DateTime(2016, 8, 1),
Amount = 55
},
new Sow()
{
Crop = "Barley",
Date = new DateTime(2017, 6, 1),
},
new Fertilise()
{
Date = new DateTime(2017, 6, 1),
Amount = 50
}
}
};
string workingDirectory = Path.GetTempFileName();
File.Delete(workingDirectory);
Directory.CreateDirectory(workingDirectory);
string apsimFileName = APSIMFiles.Create(spec, workingDirectory, "test.apsim");
XmlDocument doc = new XmlDocument();
doc.Load(apsimFileName);
// Check the start date and end date.
Assert.AreEqual(XmlUtilities.Value(doc.DocumentElement, "NameOfPaddock/Clock/start_date"), "1/04/2016");
Assert.AreEqual(XmlUtilities.Value(doc.DocumentElement, "NameOfPaddock/Clock/end_date"), "1/12/2017");
// Check operations
XmlNode operationsNode = XmlUtilities.Find(doc.DocumentElement, "NameOfPaddock/Paddock/Operations");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[0], "date"), "01-May-2016");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[0], "action"), "Wheat sow plants = 0, sowing_depth = 50, cultivar = , row_spacing = 250, crop_class = plant, skip = solid");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[1], "date"), "01-May-2016");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[1], "action"), "SurfaceOM tillage type = planter, f_incorp = 0.1, tillage_depth = 50");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[2], "date"), "01-May-2016");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[2], "action"), "Fertiliser apply amount = 50 (kg/ha), depth = 20 (mm), type = no3_n");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[3], "date"), "01-May-2016");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[3], "action"), "'Soil Water' reset");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[4], "date"), "01-May-2016");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[4], "action"), "act_mods reseting");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[5], "date"), "01-May-2016");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[5], "action"), "'Soil Nitrogen' reset");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[6], "date"), "01-May-2016");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[6], "action"), "SurfaceOM reset");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[7], "date"), "01-Aug-2016");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[7], "action"), "Fertiliser apply amount = 55 (kg/ha), depth = 20 (mm), type = no3_n");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[8], "date"), "01-Jun-2017");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[8], "action"), "Barley sow plants = 0, sowing_depth = 50, cultivar = , row_spacing = 250, crop_class = plant, skip = solid");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[9], "date"), "01-Jun-2017");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[9], "action"), "SurfaceOM tillage type = planter, f_incorp = 0.1, tillage_depth = 50");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[10], "date"), "01-Jun-2017");
Assert.AreEqual(XmlUtilities.Value(operationsNode.ChildNodes[10], "action"), "Fertiliser apply amount = 50 (kg/ha), depth = 20 (mm), type = no3_n");
// Check that 2 crops are in the simulation
Assert.IsNotNull(XmlUtilities.Find(doc.DocumentElement, "NameOfPaddock/Paddock/Wheat"));
Assert.IsNotNull(XmlUtilities.Find(doc.DocumentElement, "NameOfPaddock/Paddock/Barley"));
Directory.Delete(workingDirectory, recursive: true);
}
