private void listBox1_SelectedIndexChanged(object sender, EventArgs e)
{
abf = new ABF(listBox1.SelectedValue.ToString());
nudSweep.Maximum = abf.sweepCount - 1;
nudSweep.Value = 0;
Replot();
}
private void listBox1_SelectedIndexChanged(object sender, EventArgs e)
{
richTextBox1.Clear();
ABF abf = new ABF(listBox1.SelectedValue.ToString());
richTextBox1.Text = abf.GetAbfInfo();
}
public DataTable AbfTable(string abfFolder)
{
if (!System.IO.Directory.Exists(abfFolder))
{
return(null);
}
DataTable table = new DataTable();
table.Columns.Add("abfID", typeof(string));
table.Columns.Add("path", typeof(string));
table.Columns.Add("protocol", typeof(string));
table.Columns.Add("sweepCount", typeof(int));
table.Columns.Add("channelCount", typeof(int));
table.Columns.Add("lengthSec", typeof(double));
table.Columns.Add("units", typeof(string));
table.Columns.Add("tags", typeof(string));
string[] filePaths = System.IO.Directory.GetFiles(abfFolder, "*.abf");
foreach (string filePath in filePaths)
{
ABF abf = new ABF(filePath, false);
string protocol = System.IO.Path.GetFileNameWithoutExtension(abf.protocolPath);
double lengthSec = abf.dataPointCount / abf.dataRate;
string units = String.Join(", ", abf.adcUnits);
string tags = String.Join(", ", abf.tagComments);
table.Rows.Add(abf.abfID, abf.abfFilePath, protocol, abf.sweepCount, abf.channelCount, lengthSec, units, tags);
}
return(table);
}
static void Convert(string pathIn, string pathOut, string format)
{
Console.WriteLine($"Reading data from {System.IO.Path.GetFileName(pathIn)}...");
using (var abf = new ABF(pathIn))
{
Console.WriteLine(abf);
float[][] sweepValues = new float[abf.SweepCount][];
for (int i = 0; i < abf.SweepCount; i++)
{
sweepValues[i] = abf.GetSweep(i);
}
Console.WriteLine($"Creating {System.IO.Path.GetFileName(pathOut)}...");
if (format == "CSV")
{
Export.CSV(sweepValues, pathOut, abf.SampleRate, abf.SweepStartTimes);
}
else if (format == "TSV")
{
Export.TSV(sweepValues, pathOut, abf.SampleRate, abf.SweepStartTimes);
}
else if (format == "ATF")
{
Export.ATF(sweepValues, pathOut, abf.SampleRate, abf.SweepStartTimes);
}
else
{
throw new NotImplementedException($"Unsupported output format {format}");
}
}
}
private void btnConvert_Click(object sender, EventArgs e)
{
Enabled = false;
if (!Directory.Exists(tbOutFolder.Text))
{
Directory.CreateDirectory(tbOutFolder.Text);
}
progress.Maximum = lbABFs.Items.Count;
for (int i = 0; i < lbABFs.Items.Count; i++)
{
string abfPath = lbABFs.Items[i].ToString();
string abfID = Path.GetFileNameWithoutExtension(abfPath);
lblStatus.Text = $"Converting {abfID}.abf...";
progress.Value = i + 1;
Application.DoEvents();
var abf = new ABF(abfPath);
float[][] sweepValues = new float[abf.SweepCount][];
for (int j = 0; j < abf.SweepCount; j++)
{
sweepValues[j] = abf.GetSweep(j);
}
if (rbCSV.Checked)
{
string pathOut = Path.Combine(tbOutFolder.Text, abfID + ".csv");
Export.CSV(sweepValues, pathOut, abf.SampleRate, abf.SweepStartTimes);
}
else if (rbTSV.Checked)
{
string pathOut = Path.Combine(tbOutFolder.Text, abfID + ".tsv");
Export.TSV(sweepValues, pathOut, abf.SampleRate, abf.SweepStartTimes);
}
else if (rbATF.Checked)
{
string pathOut = Path.Combine(tbOutFolder.Text, abfID + ".atf");
Export.ATF(sweepValues, pathOut, abf.SampleRate, abf.SweepStartTimes);
}
}
progress.Value = 0;
lblStatus.Text = $"Finished converting {lbABFs.Items.Count} ABFs.";
Enabled = true;
}
public void LoadABF(string abfFileName)
{
abf = new ABF(abfFileName);
richTextBox1.Text += abf.Info();
}