public ManagedDataSource( SpectrumSource source )
{
this.source = source;
chromatogramListForm = new ChromatogramListForm();
chromatogramListForm.Text = source.Name + " chromatograms";
chromatogramListForm.TabText = source.Name + " chromatograms";
chromatogramListForm.ShowIcon = false;
CVID nativeIdFormat = CVID.MS_scan_number_only_nativeID_format;
foreach (SourceFile f in source.MSDataFile.fileDescription.sourceFiles)
{
// the first one in the list isn't necessarily useful - could be Agilent MSCalibration.bin or the like
nativeIdFormat = f.cvParamChild(CVID.MS_native_spectrum_identifier_format).cvid;
if (CVID.MS_no_nativeID_format != nativeIdFormat)
break;
}
spectrumListForm = new SpectrumListForm( nativeIdFormat );
spectrumListForm.Text = source.Name + " spectra";
spectrumListForm.TabText = source.Name + " spectra";
spectrumListForm.ShowIcon = false;
spectrumDataProcessing = new DataProcessing();
//chromatogramDataProcessing = new DataProcessing();
//graphInfoMap = new GraphInfoMap();
}
internal SetInputFileCompletedEventArgs(SpectrumSource dataSource)
{
this.dataSource = dataSource;
}
private void listView_ItemSelectionChanged(object sender, ListViewItemSelectionChangedEventArgs e)
{
if (listView.SelectedItems.Count > 1)
{
List <string> dataSourceList = new List <string>();
foreach (ListViewItem item in listView.SelectedItems)
{
if (item.SubItems[1].Text != "File Folder")
{
dataSourceList.Add(String.Format("\"{0}\"", item.SubItems[0].Text));
}
}
sourcePathTextBox.Text = String.Join(" ", dataSourceList.ToArray());
ticGraphControl.GraphPane.GraphObjList.Clear();
ticGraphControl.GraphPane.CurveList.Clear();
ticGraphControl.Visible = false;
}
else if (listView.SelectedItems.Count > 0)
{
sourcePathTextBox.Text = listView.SelectedItems[0].SubItems[0].Text;
ticGraphControl.GraphPane.GraphObjList.Clear();
ticGraphControl.GraphPane.CurveList.Clear();
string sourcePath = Path.Combine(CurrentDirectory, sourcePathTextBox.Text);
string sourceType = getSourceType(sourcePath);
if (!String.IsNullOrEmpty(sourceType) &&
sourceType != "File Folder")
{
using (MSData msd = new MSData())
{
ReaderList.FullReaderList.read(sourcePath, msd, 0, SpectrumSource.GetReaderConfig());
using (ChromatogramList cl = msd.run.chromatogramList)
{
if (cl != null && !cl.empty() && cl.find("TIC") != cl.size())
{
ticGraphControl.Visible = true;
pwiz.CLI.msdata.Chromatogram tic = cl.chromatogram(cl.find("TIC"), true);
Map <double, double> sortedFullPointList = new Map <double, double>();
IList <double> timeList = tic.binaryDataArrays[0].data;
IList <double> intensityList = tic.binaryDataArrays[1].data;
int arrayLength = timeList.Count;
for (int i = 0; i < arrayLength; ++i)
{
sortedFullPointList[timeList[i]] = intensityList[i];
}
ZedGraph.PointPairList points = new ZedGraph.PointPairList(
new List <double>(sortedFullPointList.Keys).ToArray(),
new List <double>(sortedFullPointList.Values).ToArray());
ZedGraph.LineItem item = ticGraphControl.GraphPane.AddCurve("TIC", points, Color.Black, ZedGraph.SymbolType.None);
item.Line.IsAntiAlias = true;
ticGraphControl.AxisChange();
ticGraphControl.Refresh();
}
else
{
ticGraphControl.Visible = false;
}
}
}
}
else
{
ticGraphControl.Visible = false;
}
}
else
{
sourcePathTextBox.Text = "";
}
}
internal SetInputFileCompletedEventArgs( SpectrumSource dataSource )
{
this.dataSource = dataSource;
}
public ManagedDataSource( SpectrumSource source )
{
this.source = source;
chromatogramListForm = new ChromatogramListForm();
chromatogramListForm.Text = source.Name + " chromatograms";
chromatogramListForm.TabText = source.Name + " chromatograms";
chromatogramListForm.ShowIcon = false;
CVID nativeIdFormat = source.MSDataFile.fileDescription.sourceFiles[0].cvParamChild( CVID.MS_native_spectrum_identifier_format ).cvid;
spectrumListForm = new SpectrumListForm( nativeIdFormat );
spectrumListForm.Text = source.Name + " spectra";
spectrumListForm.TabText = source.Name + " spectra";
spectrumListForm.ShowIcon = false;
spectrumDataProcessing = new DataProcessing();
//chromatogramDataProcessing = new DataProcessing();
//graphInfoMap = new GraphInfoMap();
}
