internal SpectrumListFilterChangedEventArgs( SpectrumListForm sender, SpectrumDataSet dataSet )
{
matches = sender.GridView.RowCount;
total = dataSet.SpectrumTable.Count;
}
public void updateRow( SpectrumDataSet.SpectrumTableRow row, MassSpectrum spectrum )
{
spectrumList[spectrum.Index] = spectrum;
Spectrum s = spectrum.Element; //GetElement(false);
DataProcessing dp = spectrum.DataProcessing;
Scan scan = null;
InstrumentConfiguration ic = null;
if(s.scanList.scans.Count > 0)
{
scan = s.scanList.scans[0];
ic = scan.instrumentConfiguration;
}
if( dp == null )
dp = s.dataProcessing;
CVParam param;
param = s.cvParam( CVID.MS_ms_level );
row.MsLevel = !param.empty() ? (int) param.value : 0;
param = scan != null ? scan.cvParam( CVID.MS_scan_start_time ) : new CVParam();
row.ScanTime = !param.empty() ? (double) param.value : 0;
param = s.cvParam( CVID.MS_base_peak_m_z );
row.BasePeakMz = !param.empty() ? (double) param.value : 0;
param = s.cvParam( CVID.MS_base_peak_intensity );
row.BasePeakIntensity = !param.empty() ? (double) param.value : 0;
param = s.cvParam( CVID.MS_total_ion_current );
row.TotalIonCurrent = !param.empty() ? (double) param.value : 0;
StringBuilder precursorInfo = new StringBuilder();
if( row.MsLevel == 1 || s.precursors.Count == 0 )
precursorInfo.Append( "n/a" );
else
{
foreach( Precursor p in s.precursors )
{
foreach( SelectedIon si in p.selectedIons )
{
if( precursorInfo.Length > 0 )
precursorInfo.Append( "," );
precursorInfo.Append( (double) si.cvParam( CVID.MS_selected_ion_m_z ).value );
}
}
}
if( precursorInfo.Length == 0 )
precursorInfo.Append( "unknown" );
row.PrecursorInfo = precursorInfo.ToString();
StringBuilder scanInfo = new StringBuilder();
foreach( Scan scan2 in s.scanList.scans )
{
if( scan2.scanWindows.Count > 0 )
{
foreach( ScanWindow sw in scan2.scanWindows )
{
if( scanInfo.Length > 0 )
scanInfo.Append( "," );
scanInfo.AppendFormat( "[{0}-{1}]",
(double) sw.cvParam( CVID.MS_scan_window_lower_limit ).value,
(double) sw.cvParam( CVID.MS_scan_window_upper_limit ).value );
}
}
}
if( scanInfo.Length == 0 )
scanInfo.Append( "unknown" );
row.ScanInfo = scanInfo.ToString();
row.SpotId = s.spotID;
row.SpectrumType = s.cvParamChild( CVID.MS_spectrum_type ).name;
row.DataPoints = s.defaultArrayLength;
row.IcId = ( ic == null || ic.id.Length == 0 ? "unknown" : ic.id );
row.DpId = ( dp == null || dp.id.Length == 0 ? "unknown" : dp.id );
}