private List <double> ListApes(TracerDef tracerDef)
{
var apes = new List <double>();
if (_stepsize != 0)
{
double ape1 = Math.Min(tracerDef.InitialApe, tracerDef.FinalApe);
double ape2 = Math.Max(tracerDef.InitialApe, tracerDef.FinalApe);
for (double ape = ape1; ape < ape2; ape += _stepsize)
{
apes.Add(ape);
}
apes.Add(ape2);
}
else
{
apes.Add(tracerDef.InitialApe);
for (int i = 0; i < _intermediateLevels; i++)
{
var ape = (tracerDef.InitialApe * (_intermediateLevels - i)
+ tracerDef.FinalApe * (i + 1)) / (_intermediateLevels + 1);
apes.Add(ape);
}
apes.Add(tracerDef.FinalApe);
apes.Sort();
}
var result = new List <double>();
foreach (double ape in apes)
{
double apeInt = Math.Floor(ape);
if (result.Count == 0 || apeInt != result[result.Count - 1])
{
result.Add(apeInt);
}
}
return(result);
}
private double GetTracerPercent(TracerDef tracerDef, IDictionary<TracerFormula, double> distribution)
{
int maxTracerCount = tracerDef.GetMaximumTracerCount(PeptideFileAnalysis.Peptide.Sequence);
if (maxTracerCount == 0)
{
return 0;
}
double result = 0;
foreach (var entry in distribution)
{
result += entry.Key.GetElementCount(tracerDef.Name) * 100.0 / maxTracerCount * entry.Value;
}
return result;
}