private Uri GetContentsUri(ChorusAccount chorusAccount, ChorusUrl chorusUrl) { if (chorusUrl.FileId.HasValue) { return(null); } if (chorusUrl.ExperimentId.HasValue) { return(new Uri(chorusUrl.ServerUrl + "/skyline/api/contents/experiments/" + chorusUrl.ExperimentId + "/files")); // Not L10N } if (chorusUrl.ProjectId.HasValue) { return(new Uri(chorusUrl.ServerUrl + "/skyline/api/contents/projects/" + chorusUrl.ProjectId + "/experiments")); // Not L10N } if (!chorusUrl.GetPathParts().Any()) { return(null); } string topLevelName = chorusUrl.GetPathParts().First(); TopLevelContents topLevelContents = TOP_LEVEL_ITEMS.FirstOrDefault(item => item.Name.Equals(topLevelName)); if (null != topLevelContents) { return(new Uri(chorusUrl.ServerUrl + "/skyline/api/contents" + topLevelContents.ContentsPath)); // Not L10N } return(null); }
public void Login(ChorusAccount chorusAccount, CookieContainer cookieContainer) { var webRequest = (HttpWebRequest)WebRequest.Create(new Uri(chorusAccount.ServerUrl + "/j_spring_security_check")); // Not L10N // ReSharper disable NonLocalizedString webRequest.ContentType = "application/x-www-form-urlencoded"; webRequest.Method = "POST"; webRequest.CookieContainer = cookieContainer; string postData = "j_username="******"&j_password="******"login.html")); // Not L10N if (!loginSuccessful) { throw new RemoteServerException(Resources.ChorusSession_Login_Unable_to_log_in___Username_or_password_is_incorrect_); } }
public ChromatogramGeneratorTask(ChromTaskList chromTaskList, ChorusAccount chorusAccount, ChorusUrl chorusUrl, ChromatogramRequestDocument chromatogramRequestDocument) { ChromTaskList = chromTaskList; ChorusAccount = chorusAccount; ChorusUrl = chorusUrl; ChromatogramRequestDocument = chromatogramRequestDocument; }
public void AddAuthHeader(ChorusAccount chorusAccount, HttpWebRequest webRequest) { if (null != chorusAccount) { // ReSharper disable NonLocalizedString byte[] authBytes = Encoding.UTF8.GetBytes(chorusAccount.Username + ':' + chorusAccount.Password); var authHeader = "Basic " + Convert.ToBase64String(authBytes); // ReSharper restore NonLocalizedString webRequest.Headers.Add(HttpRequestHeader.Authorization, authHeader); } }
public ChorusScanProvider(string docFilePath, ChorusUrl chorusUrl, ChromSource source, IList <float> times, TransitionFullScanInfo[] transitions) { ChorusUrl = chorusUrl; DocFilePath = docFilePath; DataFilePath = chorusUrl; Source = source; Times = times; Transitions = transitions; ChorusAccount chorusAccount = ChorusUrl.FindChorusAccount(Settings.Default.RemoteAccountList); _chorusSession = new ChorusSession(chorusAccount); }
public ChromatogramCache GenerateChromatograms(ChorusAccount chorusAccount, ChorusUrl chorusUrl, ChromatogramRequestDocument chromatogramRequestDocument) { var webRequest = (HttpWebRequest)WebRequest.Create(chorusUrl.GetChromExtractionUri()); AddAuthHeader(chorusAccount, webRequest); webRequest.Method = "POST"; // Not L10N var xmlSerializer = new XmlSerializer(typeof(ChromatogramRequestDocument)); xmlSerializer.Serialize(webRequest.GetRequestStream(), chromatogramRequestDocument); webRequest.GetRequestStream().Close(); return(SendRequest(webRequest, response => { MemoryStream memoryStream = new MemoryStream(); var responseStream = response.GetResponseStream(); if (responseStream != null) { byte[] buffer = new byte[65536]; int count; while ((count = responseStream.Read(buffer, 0, buffer.Length)) != 0) { memoryStream.Write(buffer, 0, count); } } if (0 == memoryStream.Length) { if (response.StatusCode != HttpStatusCode.OK) { throw new IOException(string.Format("Empty response: status = {0}", response.StatusCode)); // Not L10N } Debug.WriteLine("Zero byte response"); // Not L10N return null; } ChromatogramCache.RawData rawData; ChromatogramCache.LoadStructs(memoryStream, out rawData, false); var chromCacheFile = rawData.ChromCacheFiles[0]; rawData.ChromCacheFiles = new[] { chromCacheFile.ChangeFilePath(chorusUrl) }; return new ChromatogramCache(string.Empty, rawData, new ChromatogramGeneratorTask.MemoryPooledStream(memoryStream)); })); }
public ChromTaskList(Action checkCancelledAction, SrmDocument srmDocument, ChorusAccount chorusAccount, ChorusUrl chorusUrl, IEnumerable <ChromatogramRequestDocument> chromatogramRequestDocuments) { SrmDocument = srmDocument; ChorusSession = new ChorusSession(chorusAccount); _checkCancelledAction = checkCancelledAction; _chromatogramGeneratorTasks = new List <ChromatogramGeneratorTask>(); _chromKeys = new Dictionary <ChromKey, ChromatogramGeneratorTask>(); foreach (var chunk in chromatogramRequestDocuments) { ChromatogramGeneratorTask task = new ChromatogramGeneratorTask(this, chorusAccount, chorusUrl, chunk); _chromatogramGeneratorTasks.Add(task); foreach (ChromKey chromKey in ListChromKeys(chunk)) { _chromKeys[chromKey] = task; } } _executingTasks = new HashSet <ChromatogramGeneratorTask>(); }
public ChorusSession(ChorusAccount account) : base(account) { }
private ChorusAccount(ChorusAccount chorusAccount) { ServerUrl = chorusAccount.ServerUrl; Username = chorusAccount.Username; Password = chorusAccount.Password; }