public void SetSelectedFile(string file)
{
var group = _replicateGroups?.FirstOrDefault(g => (g.FileInfo != null && g.FileInfo.FilePath.GetFileName() == file) || (g.FileInfo == null && file == null));
if (group != null)
{
SelectedGroup = group;
GraphSummary.UpdateUI();
}
}
protected override void ChangeSelection(int selectedIndex, IdentityPath identityPath)
{
if (_replicateGroups == null || 0 > selectedIndex || selectedIndex >= _replicateGroups.Count)
{
return;
}
var previousFile = SelectedGroup != null ? SelectedGroup.FileInfo : null;
SelectedGroup = _replicateGroups[selectedIndex];
if (SelectedGroup.FileInfo != null)
{
foreach (var graph in Program.MainWindow.GraphChromatograms)
{
var files = graph.Files;
var index = files.IndexOf(SelectedGroup.FileInfo.FilePath.GetFileName());
if (index >= 0)
{
graph.SelectedFileIndex = index;
}
}
}
// When the user clicks on the graph, they either intend to change
// the currently selected replicate, or the currently selected IdentityPath.
// We want to prevent the UI from drilling in too deep when the user
// just wants to see a different replicate at the same level currently
// being viewed (e.g. peptide).
// Therefore, only change the currently selected IdentityPath if the currently
// selected Replicate is the last replicate in the ReplicateGroup that they
// have clicked on.
// Updated 10/3/2016 now can drill down to peptide level because multi peptide RT graph is supported.
var resultIndicesArray = IndexOfReplicate(selectedIndex).ToArray();
int iSelection = Array.IndexOf(resultIndicesArray, GraphSummary.ResultsIndex);
if (iSelection == resultIndicesArray.Length - 1 && (IsMultiSelect || !GraphChromatogram.IsSingleTransitionDisplay) && ReferenceEquals(previousFile, SelectedGroup.FileInfo))
{
GraphSummary.StateProvider.SelectPath(identityPath);
UpdateGraph(true);
return;
}
// If there is more than one replicate in the group that they
// have clicked on, then select the next replicate in that group.
// The user has clicked on a group which does not contain the
// currently selected replicate, then iSelection will be -1, and
// the first replicate in that group will be selected.
int newReplicateIndex = resultIndicesArray[((iSelection + 1) % resultIndicesArray.Length)];
ChangeSelectedIndex(newReplicateIndex);
UpdateGraph(true);
}
protected virtual void InitData()
{
List <DocNode> docNodes = new List <DocNode>();
List <IdentityPath> docNodePaths = new List <IdentityPath>();
List <List <PointPairList> > pointPairLists = new List <List <PointPairList> >();
List <String> docNodeLabels = new List <string>();
ReplicateGroups = new ReplicateGroup[0];
foreach (var docNodePath in _selectedDocNodePaths)
{
var nodeArray = _document.ToNodeArray(docNodePath);
var docNode = nodeArray.Last();
var replicateIndices = Enumerable.Range(0, _document.Settings.MeasuredResults.Chromatograms.Count);
// ReSharper disable CanBeReplacedWithTryCastAndCheckForNull
if (docNode is TransitionDocNode)
{
var nodeTran = (TransitionDocNode)docNode;
ReplicateGroups = GetReplicateGroups(replicateIndices).ToArray();
docNodes.Add(nodeTran);
docNodePaths.Add(docNodePath);
pointPairLists.Add(GetPointPairLists((PeptideDocNode)nodeArray[1], (TransitionGroupDocNode)nodeArray[2], nodeTran, _displayType));
docNodeLabels.Add(ChromGraphItem.GetTitle(nodeTran));
}
else if (docNode is TransitionGroupDocNode)
{
var nodeGroup = (TransitionGroupDocNode)docNode;
var peptideDocNode = (PeptideDocNode)nodeArray[1];
ReplicateGroups = GetReplicateGroups(replicateIndices).ToArray();
if (_displayType == DisplayTypeChrom.single || _displayType == DisplayTypeChrom.total)
{
docNodes.Add(nodeGroup);
docNodePaths.Add(docNodePath);
pointPairLists.Add(GetPointPairLists(peptideDocNode, nodeGroup, _displayType));
docNodeLabels.Add(ChromGraphItem.GetTitle(nodeGroup));
}
else
{
foreach (TransitionDocNode nodeTran in GraphChromatogram.GetDisplayTransitions(nodeGroup,
_displayType))
{
docNodes.Add(nodeTran);
docNodePaths.Add(new IdentityPath(docNodePath, nodeTran.Id));
pointPairLists.Add(GetPointPairLists(peptideDocNode, nodeGroup, nodeTran, _displayType));
docNodeLabels.Add(ChromGraphItem.GetTitle(nodeTran));
}
}
}
else if (docNode is PeptideDocNode)
{
var nodePep = (PeptideDocNode)docNode;
ReplicateGroups = GetReplicateGroups(replicateIndices).ToArray();
var isMultiSelect = _selectedDocNodePaths.Count > 1 ||
(_selectedDocNodePaths.Count == 1 && Program.MainWindow != null &&
Program.MainWindow.SelectedNode is PeptideGroupTreeNode);
foreach (var tuple in GetPeptidePointPairLists((PeptideGroupDocNode)nodeArray[0], nodePep, isMultiSelect))
{
docNodes.Add(tuple.Node);
docNodePaths.Add(docNodePath);
pointPairLists.Add(tuple.PointPairList);
docNodeLabels.Add(tuple.DisplaySeq);
}
}
}
// ReSharper restore CanBeReplacedWithTryCastAndCheckForNull
PointPairLists = pointPairLists;
DocNodes = docNodes;
_docNodePaths = ImmutableList.ValueOf(docNodePaths);
DocNodeLabels = docNodeLabels;
var oldGroupNames = ReplicateGroups.Select(g => g.GroupName).ToArray();
var uniqueGroupNames = oldGroupNames.Distinct().ToArray();
// Instert "All" groups and point pair lists in their correct positions
InsertAllGroupsAndPointPairLists(uniqueGroupNames, docNodes.Count);
// Collect all references to points that have a valid Y value
var references = CollectValidPointRefs(uniqueGroupNames, oldGroupNames, docNodes.Count);
// Merge groups if their replicate index is the same and each peptide only occurs in one of the files
MergeGroups(uniqueGroupNames, references);
// Remove groups that don't have any peptides in them
RemoveEmptyGroups(docNodes.Count);
}
protected bool Equals(ReplicateGroup other)
{
return(string.Equals(GroupName, other.GroupName) && Equals(FileInfo, other.FileInfo) && Equals(ReplicateIndexes, other.ReplicateIndexes) && IsAllGroup == other.IsAllGroup);
}
