public AreaCVHistogram2DGraphPane(GraphSummary graphSummary)
: base(graphSummary)
{
_areaCVGraphData = null;
_lineItems = new LineItem[2];
_cache = new AreaCVGraphData.AreaCVGraphDataCache();
}
public AreaCVGraphDataStatistics(AreaCVGraphData data, int items)
{
DataCount = data.Data.Count;
Items = items;
MinMeanArea = data.MinMeanArea;
MaxMeanArea = data.MaxMeanArea;
Total = data.Total;
MaxCV = data.MaxCV;
MinCV = data.MinCV;
MaxFrequency = data.MaxFrequency;
MedianCV = data.MedianCV;
MeanCV = data.MeanCV;
BelowCVCutoff = data.BelowCVCutoff;
}
private AreaCVGraphData CreateOrGet(GraphDataProperties properties)
{
var result = Get(properties);
if (result == null)
{
SrmDocument document;
AreaCVGraphSettings settings;
lock (_cacheInfo)
{
document = _cacheInfo.Document;
settings = _cacheInfo.Settings;
}
result = new AreaCVGraphData(document,
new AreaCVGraphSettings(settings.GraphType,
properties.NormalizationMethod,
properties.RatioIndex,
settings.Group,
properties.Annotation,
settings.PointsType,
settings.QValueCutoff,
settings.CVCutoff,
properties.MinimumDetections,
settings.BinWidth,
settings.MsLevel,
settings.Transitions,
settings.CountTransitions), _tokenSource.Token);
lock (_cacheInfo)
{
if (IsValidFor(document, settings))
{
_cacheInfo.Data.Add(result);
}
}
}
return(result);
}
public override void UpdateGraph(bool selectionChanged)
{
if (!GraphSummary.DocumentUIContainer.DocumentUI.Settings.HasResults)
{
_areaCVGraphData = null;
return;
}
var settings = new AreaCVGraphData.AreaCVGraphSettings(GraphSummary.Type);
_document = GraphSummary.DocumentUIContainer.DocumentUI;
_percentage = !Settings.Default.AreaCVShowDecimals;
_decimals = _percentage ? 1 : 3;
CurveList.Clear();
var gotData = _cache.TryGet(_document, settings, DataCallback, out _areaCVGraphData);
if (!gotData)
{
Title.Text = Resources.AreaCVHistogram2DGraphPane_UpdateGraph_Calculating____;
return;
}
if (!_areaCVGraphData.IsValid)
{
Title.Text = Resources.AreaCVHistogram2DGraphPane_Draw_Not_enough_data;
return;
}
var factor = AreaGraphController.GetAreaCVFactorToDecimal();
Title.Text = string.Empty;
YAxis.Title.Text = Resources.AreaCVHistogram2DGraphPane_UpdateGraph_CV + (_percentage ? @" (%)" : string.Empty);
XAxis.Title.Text = Resources.AreaCvHistogram2DGraphPane_UpdateGraph_Log10_Mean_Area;
XAxis.Scale.MinAuto = XAxis.Scale.MinAuto = XAxis.Scale.MaxAuto = YAxis.Scale.MaxAuto = false;
XAxis.Scale.Min = Math.Max(0, double.IsNaN(Settings.Default.AreaCVMinLog10Area) ? _areaCVGraphData.MinMeanArea : Settings.Default.AreaCVMinLog10Area);
XAxis.Scale.Max = double.IsNaN(Settings.Default.AreaCVMaxLog10Area) ? _areaCVGraphData.MaxMeanArea : Settings.Default.AreaCVMaxLog10Area;
YAxis.Scale.Min = 0.0;
YAxis.Scale.Max = double.IsNaN(Settings.Default.AreaCVMaxCV) ? _areaCVGraphData.MaxCV * factor : Settings.Default.AreaCVMaxCV;
AxisChange();
var points = _areaCVGraphData.Data
.Select(d => new HeatMapData.TaggedPoint3D(new Point3D(d.MeanArea, d.CV * factor, d.Frequency), d))
.ToList();
Items = points.Count; // Because heatmaps can't be trusted to have a consistent number of points on all monitors
var heatMapData = new HeatMapData(points);
HeatMapGraphPane.GraphHeatMap(this, heatMapData, 17, 2, (float)(_areaCVGraphData.MinCV * factor), (float)(_areaCVGraphData.MaxCV * factor), Settings.Default.AreaCVLogScale, 0);
var unit = _percentage ? @"%" : string.Empty;
if (Settings.Default.AreaCVShowMedianCV)
{
string text = string.Format(Resources.AreaCVHistogram2DGraphPane_UpdateGraph_Median___0_, HistogramHelper.FormatDouble(_areaCVGraphData.MedianCV * factor, _decimals) + unit);
_lineItems[0] = AddLineItem(text, XAxis.Scale.Min, XAxis.Scale.Max, _areaCVGraphData.MedianCV * factor, _areaCVGraphData.MedianCV * factor, Color.Blue);
CurveList.Insert(0, _lineItems[0]);
}
if (Settings.Default.AreaCVShowCVCutoff)
{
string text = string.Format(Resources.AreaCVHistogramGraphPane_UpdateGraph_Below__0____1_, Settings.Default.AreaCVCVCutoff + unit,
HistogramHelper.FormatDouble(_areaCVGraphData.BelowCVCutoff * factor, _decimals) +
unit);
_lineItems[1] = AddLineItem(text, XAxis.Scale.Min, XAxis.Scale.Max, Settings.Default.AreaCVCVCutoff, Settings.Default.AreaCVCVCutoff, Color.Red);
CurveList.Insert(0, _lineItems[1]);
}
}
private void DataCallback(AreaCVGraphData data)
{
GraphSummary.GraphControl.BeginInvoke((Action)(() => { GraphSummary.UpdateUI(); }));
}
public bool TryGet(SrmDocument document, AreaCVGraphSettings settings, Action <AreaCVGraphData> callback, out AreaCVGraphData result)
{
var properties = new GraphDataProperties(settings);
if (!IsValidFor(document, settings))
{
Cancel();
lock (_cacheInfo)
{
_cacheInfo.Clear();
_cacheInfo.Document = document;
_cacheInfo.Settings = settings;
}
// Get a list of all properties that we want to cache data for, except for the data that just got requested
var propertyList = new List <GraphDataProperties>(GetPropertyVariants(settings).Except(new[] { properties }));
_producerConsumer.Add(propertyList, false, false);
}
result = Get(properties);
if (result != null)
{
return(true);
}
lock (_requestLock)
{
if (!properties.Equals((object)_requested))
{
_producerConsumer.Add(properties);
_requested = properties;
_callback = callback;
}
return(false);
}
}
public override void UpdateGraph(bool selectionChanged)
{
if (!GraphSummary.DocumentUIContainer.DocumentUI.Settings.HasResults)
{
_areaCVGraphData = null;
return;
}
var settings = new AreaCVGraphData.AreaCVGraphSettings(GraphSummary.Type);
_document = GraphSummary.DocumentUIContainer.DocumentUI;
var factor = AreaGraphController.GetAreaCVFactorToDecimal();
BarSettings.Type = BarType.SortedOverlay;
BarSettings.ClusterScaleWidth = Settings.Default.AreaCVHistogramBinWidth;
BarSettings.MinClusterGap = 0.0f;
_percentage = !Settings.Default.AreaCVShowDecimals;
_decimals = _percentage ? 1 : 3;
GraphObjList.Clear();
CurveList.Clear();
_stickItems.Clear();
var gotData = _cache.TryGet(_document, settings, DataCallback, out _areaCVGraphData);
if (!gotData || !_areaCVGraphData.IsValid)
{
return;
}
var fontHeight = GraphSummary.CreateFontSpec(Color.Black).GetHeight(CalcScaleFactor());
var height = PaneHeightToYValue(fontHeight);
var heightFactor = 1;
if (Settings.Default.AreaCVShowMedianCV)
{
var stick = AddStickItem(_areaCVGraphData.MedianCV * factor, _areaCVGraphData.MedianCV * factor, 0.0, _areaCVGraphData.MaxFrequency + heightFactor++ *height, Color.Blue);
CurveList.Add(stick);
_stickItems.Add(stick);
}
if (Settings.Default.AreaCVShowCVCutoff)
{
var stick = AddStickItem(Settings.Default.AreaCVCVCutoff, Settings.Default.AreaCVCVCutoff, 0.0, _areaCVGraphData.MaxFrequency + heightFactor++ *height, Color.Red);
CurveList.Add(stick);
_stickItems.Add(stick);
}
var selected = HistogramHelper.GetSelectedPeptides(GraphSummary).NodePeps.OrderBy(p => p.Id.GlobalIndex).ToList();
var comparer = Comparer <PeptideDocNode> .Create((a, b) => a.Id.GlobalIndex.CompareTo(b.Id.GlobalIndex));
var selectedPoints = new PointPairList();
var selectedPoints2 = new PointPairList();
var otherPoints = new PointPairList();
foreach (var d in _areaCVGraphData.Data)
{
int frequency;
var x = d.CV * factor + Settings.Default.AreaCVHistogramBinWidth / 2.0f;
var pt = new PointPair(x, d.Frequency)
{
Tag = d
};
if (Settings.Default.ShowReplicateSelection &&
(frequency = d.PeptideAnnotationPairs.Count(pair => selected.BinarySearch(pair.Peptide, comparer) >= 0)) > 0)
{
selectedPoints.Add(pt);
selectedPoints2.Add(new PointPair(x, frequency)
{
Tag = d
});
}
else
{
otherPoints.Add(pt);
}
}
CurveList.Insert(0, MakeBarItem(selectedPoints2, Color.Red));
CurveList.Insert(1, MakeBarItem(selectedPoints, Color.FromArgb(Color.Red.ToArgb() & 0x7FFFFFFF)));
CurveList.Insert(2, MakeBarItem(otherPoints, Color.FromArgb(180, 220, 255)));
XAxis.Title.Text = Resources.AreaCVHistogramGraphPane_UpdateGraph_CV + (_percentage ? @" (%)" : string.Empty);
YAxis.Title.Text = Resources.AreaCVHistogramGraphPane_UpdateGraph_Frequency;
XAxis.Scale.Min = YAxis.Scale.Min = 0;
XAxis.Scale.MinAuto = XAxis.Scale.MaxAuto = YAxis.Scale.MinAuto = YAxis.Scale.MaxAuto = false;
if (!double.IsNaN(Settings.Default.AreaCVMaxCV))
{
XAxis.Scale.Max = Settings.Default.AreaCVMaxCV;
}
else
{
XAxis.Scale.Max = _areaCVGraphData.MaxCV * factor + Settings.Default.AreaCVHistogramBinWidth;
}
if (!double.IsNaN(Settings.Default.AreaCVMaxFrequency))
{
YAxis.Scale.Max = Settings.Default.AreaCVMaxFrequency;
}
else
{
YAxis.Scale.Max = _areaCVGraphData.MaxFrequency + heightFactor * height;
}
AxisChange();
}
