SBMLExternalValidator(SBMLExternalValidator arg0) : this(libsbmlPINVOKE.new_SBMLExternalValidator__SWIG_1(SBMLExternalValidator.getCPtr(arg0)), true) { if (libsbmlPINVOKE.SWIGPendingException.Pending) { throw libsbmlPINVOKE.SWIGPendingException.Retrieve(); } }
internal static HandleRef getCPtrAndDisown(SBMLExternalValidator obj) { HandleRef ptr = new HandleRef(null, IntPtr.Zero); if (obj != null) { ptr = obj.swigCPtr; obj.swigCMemOwn = false; } return(ptr); }
/** * Copy constructor. */ /* libsbml-internal */ public SBMLExternalValidator(SBMLExternalValidator arg0) : this(libsbmlPINVOKE.new_SBMLExternalValidator__SWIG_1(SBMLExternalValidator.getCPtr(arg0)), true) { if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve(); }
internal static HandleRef getCPtrAndDisown(SBMLExternalValidator obj) { HandleRef ptr = new HandleRef(null, IntPtr.Zero); if (obj != null) { ptr = obj.swigCPtr; obj.swigCMemOwn = false; } return ptr; }
internal static HandleRef getCPtr(SBMLExternalValidator obj) { return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr; }
internal static HandleRef getCPtr(SBMLExternalValidator obj) { return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr); }
public static int Main(string[] args) { if (args.Length < 3) { Console.WriteLine("Usage: callExternalValidator filename externalValidator [ tempSBMLFile outputFile [ ADDITIONAL-ARGS] ]"); return 1; } string filename = args[0]; // read additional args string externalValidator = args[1]; string tempSBMLFileName = filename + "_temp.xml"; if (args.Length > 2) tempSBMLFileName = args[2]; string outputFile = filename + "_out.xml"; if (args.Length > 3) outputFile = args[3]; List<string> additionalArgs = new List<string>(); for (int i = 4; i < args.Length; i++) additionalArgs.Add(args[i]); // add the output file as additional arg additionalArgs.Add(outputFile); // read the file name SBMLDocument document = libsbml.readSBML(filename); // create a new external validator that will write the model to // tempFile, then call teh externalValidator with the given number of arguments // to produce the output file. This output file will then be parsed and its // errors will be added to the error log. SBMLExternalValidator validator = new SBMLExternalValidator(); validator.setProgram(externalValidator); validator.setSBMLFileName(tempSBMLFileName); validator.setOutputFileName(outputFile); foreach (string item in additionalArgs) { validator.addArgument(item); } // this means that the external program will be called with the following arguments // // externalValidator tempSBMLFileName additionalArgs // // (where additionalargs contains the output file as last argument) // // The output file that is generated should be an XML document following the // Validator XML format as described here: http://sbml.org/validator/api/#xml // // disable all regular checks document.setApplicableValidators(0); // add a custom validator document.addValidator(validator); // check consistency like before int numErrors = (int)document.checkConsistency(); // print errors and warnings document.printErrors(); // return number of errors return numErrors; }