/// <summary>
/// Reads an ITK image from file, specifying the output pixel type.
/// </summary>
/// <param name="file">filename</param>
/// <param name="outputType">output pixel type</param>
/// <returns>image</returns>
public static sitk.Image ReadITKImageFromFile(string file, sitk.PixelIDValueEnum outputType)
{
sitk.ImageFileReader reader = new sitk.ImageFileReader();
reader.SetFileName(file);
reader.SetOutputPixelType(outputType);
return(reader.Execute());
}
/// <summary>
/// Resample image output pixel type.
/// </summary>
/// <param name="img">image</param>
/// <param name="pixelIDValue">output pixel type</param>
/// <returns>sitk image</returns>
public static sitk.Image ResampleImage(sitk.Image img, sitk.PixelIDValueEnum pixelIDValue)
{
sitk.ResampleImageFilter resampleImageFilter = new sitk.ResampleImageFilter();
resampleImageFilter.SetOutputPixelType(pixelIDValue);
resampleImageFilter.SetOutputOrigin(img.GetOrigin());
resampleImageFilter.SetOutputDirection(img.GetDirection());
resampleImageFilter.SetOutputSpacing(img.GetSpacing());
return(resampleImageFilter.Execute(img));
}
/// <summary>
/// Reads an ITK image as a grayscale image.
/// </summary>
/// <param name="file">filename</param>
/// <param name="outputType">output datatype</param>
/// <param name="channel">channel to extract</param>
/// <returns>grayscale ITK image</returns>
public static sitk.Image ReadITKImageAsGrayscaleFromFile(string file, sitk.PixelIDValueEnum outputType, ColorChannel channel)
{
sitk.ImageFileReader reader = new sitk.ImageFileReader();
reader.SetFileName(file);
reader.SetOutputPixelType(outputType);
sitk.Image temp = reader.Execute();
sitk.Image result = null;
sitk.VectorIndexSelectionCastImageFilter rgbVector = new sitk.VectorIndexSelectionCastImageFilter();
switch (channel)
{
case ColorChannel.R: result = rgbVector.Execute(temp, 0, sitk.PixelIDValueEnum.sitkFloat32); break;
case ColorChannel.G: result = rgbVector.Execute(temp, 1, sitk.PixelIDValueEnum.sitkFloat32); break;
case ColorChannel.B: result = rgbVector.Execute(temp, 2, sitk.PixelIDValueEnum.sitkFloat32); break;
}
return(result);
}
/// <summary>
/// Resize image by width and height and set output pixel type.
/// </summary>
/// <param name="img">input image</param>
/// <param name="width">width</param>
/// <param name="height">height</param>
/// <param name="pixelType">output pixel type</param>
/// <returns>resampled image</returns>
public static sitk.Image ResizeImage(sitk.Image img, uint width, uint height, sitk.PixelIDValueEnum pixelType)
{
sitk.VectorUInt32 vec = new sitk.VectorUInt32();
vec.Add(width);
vec.Add(height);
sitk.ResampleImageFilter resampleFilter = new sitk.ResampleImageFilter();
resampleFilter.SetSize(vec);
resampleFilter.SetOutputOrigin(img.GetOrigin());
resampleFilter.SetOutputDirection(img.GetDirection());
resampleFilter.SetOutputSpacing(img.GetSpacing());
resampleFilter.SetOutputPixelType(pixelType);
resampleFilter.SetDefaultPixelValue(255.0);
sitk.Image resultImage = resampleFilter.Execute(img);
img.Dispose();
return(resultImage);
}
/// <summary>
/// Interpolate image by interpolation type and output pixel type.
/// </summary>
/// <param name="img"></param>
/// <param name="interpolator"></param>
/// <param name="pixelIDValueEnum"></param>
/// <returns>interpolated image</returns>
public static sitk.Image InterpolateImage(sitk.Image img, sitk.InterpolatorEnum interpolator, sitk.PixelIDValueEnum pixelIDValueEnum, double defaultPixelType = 0.0)
{
sitk.ResampleImageFilter resampleImageFilter = new sitk.ResampleImageFilter();
resampleImageFilter.SetSize(img.GetSize());
resampleImageFilter.SetOutputOrigin(img.GetOrigin());
resampleImageFilter.SetOutputDirection(img.GetDirection());
resampleImageFilter.SetOutputSpacing(img.GetSpacing());
resampleImageFilter.SetInterpolator(interpolator);
resampleImageFilter.SetOutputPixelType(pixelIDValueEnum);
resampleImageFilter.SetDefaultPixelValue(defaultPixelType);
return(resampleImageFilter.Execute(img));
}