/// <summary>
/// Write ITK image to file.
/// </summary>
/// <param name="img">image</param>
/// <param name="outputFileName">output filename</param>
public static void WriteSitkImage(sitk.Image img, string outputFileName)
{
sitk.ImageFileWriter writer = new sitk.ImageFileWriter();
writer.SetFileName(outputFileName);
writer.Execute(img);
writer.Dispose();
}
/// <summary>
/// Write transformed file to disk.
/// </summary>
/// <param name="imagename">filename</param>
public static void WriteTransformedImage(sitk.Image img, string fullFilename)
{
sitk.CastImageFilter castImageFilter = new sitk.CastImageFilter();
castImageFilter.SetOutputPixelType(sitk.PixelIDValueEnum.sitkVectorUInt8);
sitk.Image temp = castImageFilter.Execute(img);
sitk.ImageFileWriter writer = new sitk.ImageFileWriter();
writer.SetFileName(fullFilename);
writer.Execute(temp);
}
/// <summary>
/// Write transformed image to disk.
/// </summary>
/// <param name="imagename">image filename</param>
public void WriteTransformedImage(string imagename)
{
sitk.CastImageFilter castImageFilter = new sitk.CastImageFilter();
castImageFilter.SetOutputPixelType(sitk.PixelIDValueEnum.sitkVectorUInt8);
sitk.Image temp = castImageFilter.Execute(transformedImage);
sitk.ImageFileWriter writer = new sitk.ImageFileWriter();
writer.SetFileName(Path.Combine(registrationParameters.OutputDirectory, imagename));
writer.Execute(temp);
}
public itk.simple.Image WstepnePrzetwarzanie(itk.simple.Image image)
{
itk.simple.BinaryMorphologicalClosingImageFilter closer = new BinaryMorphologicalClosingImageFilter();
closer.SetKernelType(KernelEnum.sitkCross);
closer.SetKernelRadius(1);
closer.SetForegroundValue(511);
itk.simple.Image imClose = closer.Execute(image);
itk.simple.SmoothingRecursiveGaussianImageFilter gauss = new SmoothingRecursiveGaussianImageFilter();
gauss.SetSigma(1);
itk.simple.Image gausImage = gauss.Execute(imClose);
itk.simple.CastImageFilter caster = new CastImageFilter();
caster.SetOutputPixelType(itk.simple.PixelIDValueEnum.sitkInt16);
itk.simple.Image castImage = caster.Execute(gausImage);
itk.simple.ImageFileWriter writer = new itk.simple.ImageFileWriter();
writer.SetFileName("WstepnePrzetwarzanie.dcm");
writer.Execute(image);
return(castImage);
}
public static void WriteImage(sitk.Image image, string fileName)
{
sitk.ImageFileWriter imageFileWriter = new sitk.ImageFileWriter();
imageFileWriter.SetFileName(fileName);
imageFileWriter.Execute(image);
}
public itk.simple.Image WstepnePrzetwarzanie(itk.simple.Image image)
{
itk.simple.BinaryMorphologicalClosingImageFilter closer = new BinaryMorphologicalClosingImageFilter();
closer.SetKernelType(KernelEnum.sitkCross);
closer.SetKernelRadius(1);
closer.SetForegroundValue(511);
itk.simple.Image imClose = closer.Execute(image);
itk.simple.SmoothingRecursiveGaussianImageFilter gauss = new SmoothingRecursiveGaussianImageFilter();
gauss.SetSigma(1);
itk.simple.Image gausImage = gauss.Execute(imClose);
itk.simple.CastImageFilter caster = new CastImageFilter();
caster.SetOutputPixelType(itk.simple.PixelIDValueEnum.sitkInt16);
itk.simple.Image castImage = caster.Execute(gausImage);
itk.simple.ImageFileWriter writer = new itk.simple.ImageFileWriter();
writer.SetFileName("WstepnePrzetwarzanie.dcm");
writer.Execute(image);
return castImage;
}
static void SaveImage(sitk.Image image, string pathToFile)
{
sitk.ImageFileWriter writer = new sitk.ImageFileWriter();
writer.SetFileName(pathToFile);
writer.Execute(image);
}