コード例 #1
0
        public FhirImplementationGuide Convert(ImplementationGuide ig, SummaryType?summaryType = null, bool includeVocabulary = true)
        {
            var parserSettings = new fhir_stu3.Hl7.Fhir.Serialization.ParserSettings();

            parserSettings.AcceptUnknownMembers        = true;
            parserSettings.AllowUnrecognizedEnums      = true;
            parserSettings.DisallowXsiAttributesOnRoot = false;
            var fhirXmlParser  = new FhirXmlParser(parserSettings);
            var fhirJsonParser = new FhirJsonParser(parserSettings);

            string url = string.Format("ImplementationGuide/{0}", ig.Id);

            if (!string.IsNullOrEmpty(ig.Identifier) && (ig.Identifier.StartsWith("http://") || ig.Identifier.StartsWith("https://")))
            {
                url = ig.Identifier.TrimEnd('/') + "/" + url.TrimStart('/');
            }

            var fhirImplementationGuide = new FhirImplementationGuide()
            {
                Id   = ig.Id.ToString(),
                Name = ig.Name,
                Url  = url
            };

            // Status
            if (ig.PublishStatus == PublishStatus.GetPublishedStatus(this.tdb))
            {
                fhirImplementationGuide.Status = PublicationStatus.Active;
            }
            else if (ig.PublishStatus == PublishStatus.GetRetiredStatus(this.tdb) || ig.PublishStatus == PublishStatus.GetDeprecatedStatus(this.tdb))
            {
                fhirImplementationGuide.Status = PublicationStatus.Retired;
            }
            else
            {
                fhirImplementationGuide.Status = PublicationStatus.Draft;
            }

            if (summaryType == null || summaryType == SummaryType.Data)
            {
                // Package
                FhirImplementationGuide.PackageComponent package = new FhirImplementationGuide.PackageComponent();
                package.Name = "Profiles in this Implementation Guide";
                fhirImplementationGuide.Package.Add(package);

                // Page: Create a page for the implementation guide. This is required by the fhir ig publisher
                fhirImplementationGuide.Page        = new FhirImplementationGuide.PageComponent();
                fhirImplementationGuide.Page.Kind   = FhirImplementationGuide.GuidePageKind.Page;
                fhirImplementationGuide.Page.Title  = ig.GetDisplayName();
                fhirImplementationGuide.Page.Source = string.Format("{0}://{1}/IG/View/{2}", this.scheme, this.authority, ig.Id);

                // Add profiles to the implementation guide
                List <Template> templates        = ig.GetRecursiveTemplates(this.tdb, inferred: false);
                var             profileResources = (from t in templates.OrderBy(y => y.ImpliedTemplateId)
                                                    select new FhirImplementationGuide.ResourceComponent()
                {
                    Example = false,
                    Source = new ResourceReference()
                    {
                        Reference = string.Format("StructureDefinition/{0}", t.FhirId()),
                        Display = t.Name
                    }
                });
                package.Resource.AddRange(profileResources);

                if (includeVocabulary)
                {
                    // Add value sets to the implementation guide
                    var valueSetsIds = (from t in templates
                                        join tc in this.tdb.TemplateConstraints.AsNoTracking() on t.Id equals tc.TemplateId
                                        where tc.ValueSetId != null
                                        select tc.ValueSetId)
                                       .Distinct()
                                       .ToList();
                    var valueSets = (from vs in this.tdb.ValueSets
                                     join vsi in valueSetsIds on vs.Id equals vsi
                                     select vs).ToList();
                    var valueSetResources = (from vs in valueSets
                                             where vs.GetIdentifier() != null && !vs.GetIdentifier().StartsWith("http://hl7.org/fhir/ValueSet/")    // Ignore value sets in the base spec
                                             select new FhirImplementationGuide.ResourceComponent()
                    {
                        Example = false,
                        Source = new ResourceReference()
                        {
                            Reference = string.Format("ValueSet/{0}", vs.GetFhirId()),
                            Display = vs.Name
                        }
                    });
                    package.Resource.AddRange(valueSetResources);
                }

                // Add each of the individual FHIR resources added as files to the IG
                foreach (var file in ig.Files)
                {
                    var      fileData = file.GetLatestData();
                    Resource resource = null;

                    try
                    {
                        string fileContent = System.Text.Encoding.UTF8.GetString(fileData.Data);

                        if (file.MimeType == "application/xml" || file.MimeType == "text/xml")
                        {
                            resource = fhirXmlParser.Parse <Resource>(fileContent);
                        }
                        else if (file.MimeType == "application/json")
                        {
                            resource = fhirJsonParser.Parse <Resource>(fileContent);
                        }
                    }
                    catch
                    {
                    }

                    if (resource == null || string.IsNullOrEmpty(resource.Id))
                    {
                        continue;
                    }

                    var packageFile = new FhirImplementationGuide.ResourceComponent()
                    {
                        Example = false,
                        Source  = new ResourceReference()
                        {
                            Reference = string.Format("{0}/{1}", resource.ResourceType, resource.Id),
                            Display   = GetResourceName(resource, file.FileName)
                        }
                    };

                    package.Resource.Add(packageFile);
                }

                // Add each of the samples generated for the template/profile
                var templateExamples = (from t in templates
                                        join ts in this.tdb.TemplateSamples on t.Id equals ts.TemplateId
                                        select new { Template = t, Sample = ts });

                foreach (var templateExample in templateExamples)
                {
                    Resource resource = null;

                    try
                    {
                        resource = fhirXmlParser.Parse <Resource>(templateExample.Sample.XmlSample);
                    }
                    catch
                    {
                    }

                    try
                    {
                        if (resource == null)
                        {
                            resource = fhirJsonParser.Parse <Resource>(templateExample.Sample.XmlSample);
                        }
                    }
                    catch
                    {
                    }

                    if (resource == null || string.IsNullOrEmpty(resource.Id))
                    {
                        continue;
                    }

                    var packageExample = new FhirImplementationGuide.ResourceComponent()
                    {
                        Example = true,
                        Source  = new ResourceReference()
                        {
                            Reference = string.Format("{0}/{1}", resource.ResourceType, resource.Id),
                            Display   = GetResourceName(resource, templateExample.Sample.Name)
                        },
                        ExampleFor = new ResourceReference()
                        {
                            Reference = string.Format("StructureDefinition/{0}", templateExample.Template.Bookmark),
                            Display   = templateExample.Template.Name
                        }
                    };

                    package.Resource.Add(packageExample);
                }
            }

            return(fhirImplementationGuide);
        }
コード例 #2
0
        public FhirImplementationGuide Convert(ImplementationGuide ig, SummaryType?summaryType = null, bool includeVocabulary = true)
        {
            var fhirImplementationGuide = new FhirImplementationGuide()
            {
                Id   = ig.Id.ToString(),
                Name = ig.Name,
                Url  = string.Format("ImplementationGuide/{0}", ig.Id)
            };

            // Status
            if (ig.PublishStatus == PublishStatus.GetPublishedStatus(this.tdb))
            {
                fhirImplementationGuide.Status = ConformanceResourceStatus.Active;
            }
            else if (ig.PublishStatus == PublishStatus.GetRetiredStatus(this.tdb) || ig.PublishStatus == PublishStatus.GetDeprecatedStatus(this.tdb))
            {
                fhirImplementationGuide.Status = ConformanceResourceStatus.Retired;
            }
            else
            {
                fhirImplementationGuide.Status = ConformanceResourceStatus.Draft;
            }

            if (summaryType == null || summaryType == SummaryType.Data)
            {
                // Package
                FhirImplementationGuide.PackageComponent package = new FhirImplementationGuide.PackageComponent();
                package.Name = "Profiles in this Implementation Guide";
                fhirImplementationGuide.Package.Add(package);

                // Page: Create a page for the implementation guide. This is required by the fhir ig publisher
                fhirImplementationGuide.Page        = new FhirImplementationGuide.PageComponent();
                fhirImplementationGuide.Page.Kind   = FhirImplementationGuide.GuidePageKind.Page;
                fhirImplementationGuide.Page.Title  = ig.GetDisplayName();
                fhirImplementationGuide.Page.Source = string.Format("{0}://{1}/IG/View/{2}", this.scheme, this.authority, ig.Id);

                // Add profiles to the implementation guide
                List <Template> templates        = ig.GetRecursiveTemplates(this.tdb, inferred: false);
                var             profileResources = (from t in templates
                                                    select new FhirImplementationGuide.ResourceComponent()
                {
                    Example = false,
                    Source = new ResourceReference()
                    {
                        Reference = string.Format("StructureDefinition/{0}", t.FhirId()),
                        Display = t.Name
                    }
                });
                package.Resource.AddRange(profileResources);

                if (includeVocabulary)
                {
                    // Add value sets to the implementation guide
                    var valueSets = (from t in templates
                                     join tc in this.tdb.TemplateConstraints on t.Id equals tc.TemplateId
                                     where tc.ValueSet != null
                                     select tc.ValueSet).Distinct().ToList();
                    var valueSetResources = (from vs in valueSets
                                             select new FhirImplementationGuide.ResourceComponent()
                    {
                        Example = false,
                        Source = new ResourceReference()
                        {
                            Reference = string.Format("ValueSet/{0}", vs.Id.ToString()),
                            Display = vs.Name
                        }
                    });
                    package.Resource.AddRange(valueSetResources);
                }

                // Add each of the individual FHIR resources added as files to the IG
                foreach (var file in ig.Files)
                {
                    var      fileData = file.GetLatestData();
                    Resource resource = null;

                    try
                    {
                        string fileContent = System.Text.Encoding.UTF8.GetString(fileData.Data);

                        if (file.MimeType == "application/xml" || file.MimeType == "text/xml")
                        {
                            resource = FhirParser.ParseResourceFromXml(fileContent);
                        }
                        else if (file.MimeType == "application/json")
                        {
                            resource = FhirParser.ParseResourceFromJson(fileContent);
                        }
                    }
                    catch
                    {
                    }

                    if (resource == null || string.IsNullOrEmpty(resource.Id))
                    {
                        continue;
                    }

                    var packageFile = new FhirImplementationGuide.ResourceComponent()
                    {
                        Example = false,
                        Source  = new ResourceReference()
                        {
                            Reference = string.Format("{0}/{1}", resource.ResourceType, resource.Id),
                            Display   = GetResourceName(resource, file.FileName)
                        }
                    };

                    package.Resource.Add(packageFile);
                }

                // Add each of the samples generated for the template/profile
                var templateExamples = (from t in templates
                                        join ts in this.tdb.TemplateSamples on t.Id equals ts.TemplateId
                                        select new { Template = t, Sample = ts });

                foreach (var templateExample in templateExamples)
                {
                    Resource resource = null;

                    try
                    {
                        resource = FhirParser.ParseResourceFromXml(templateExample.Sample.XmlSample);
                    }
                    catch
                    {
                    }

                    try
                    {
                        if (resource == null)
                        {
                            resource = FhirParser.ParseResourceFromJson(templateExample.Sample.XmlSample);
                        }
                    }
                    catch
                    {
                    }

                    if (resource == null || string.IsNullOrEmpty(resource.Id))
                    {
                        continue;
                    }

                    var packageExample = new FhirImplementationGuide.ResourceComponent()
                    {
                        Example = true,
                        Source  = new ResourceReference()
                        {
                            Reference = string.Format("{0}/{1}", resource.ResourceType, resource.Id),
                            Display   = GetResourceName(resource, templateExample.Sample.Name)
                        }
                    };

                    package.Resource.Add(packageExample);
                }
            }

            return(fhirImplementationGuide);
        }