public static IPlate GetPlate(string plateJsonString)
{
var jsonDocument = JsonDocument.Parse(plateJsonString);
var rootElement = jsonDocument.RootElement;
var name = rootElement.GetProperty("name").GetString();
var properties = (
UdfsHelper.SubjectJsonElementToSubjectPropertyDictionary(rootElement)
)
.Concat
(
UdfsHelper.UdfsJsonElementToPropertyDictionary(jsonDocument.RootElement.GetProperty("udfs"))
)
.ToDictionary(x => x.Key, x => x.Value);
if (!properties.ContainsKey("Plate Type"))
{
throw new InvalidSubjectTypeException(name, "Plate", properties["subject_type:name"]);
}
var plateType = properties["Plate Type"];
IPlate plate = plateType switch
{
"Viral Prep Plate" => new Plate96(name, properties),
"RNA Plate" => new Plate96(name, properties),
"PCR Plate" => new Plate384(name, properties),
_ => throw new Exception($"Unhandled {nameof(plateType)}: {plateType}"),
};
return(plate);
}
public static IEnumerable <Well> GetWells(string samplesJsonString)
{
var jsonDocument = JsonDocument.Parse(samplesJsonString);
var wells = (from subject in jsonDocument.RootElement.GetProperty("Subjects").EnumerateArray()
select new Well(
name: subject.GetProperty("name").ToString(),
properties: (
UdfsHelper.SubjectJsonElementToSubjectPropertyDictionary(subject)
)
.Concat
(
UdfsHelper.UdfsJsonElementToPropertyDictionary(subject.GetProperty("udfs"))
).ToDictionary(x => x.Key, x => x.Value)
)).OrderBy(w => WellIndex(w));
return(wells);
}
