// REAL MAGIC HERE! y- B-
private void DrawData(Graphics g, float Xunit, float Yunit,int xstart )
{
PeptideMW PMW = new PeptideMW(PeptideSequence);
float[] Bs = PMW.GetPepFragmentBValues();
float[] Ys = PMW.GetPepFragmentYValues();
bool bPhos = PMW.IsPhosphorylation();
int Count = SpectrumData.Count;
int i = 0;
for (i = 0; i < Count; i++)
{
float mz = ((MZintensitiy )SpectrumData[i]).mz ;
float intensity = ((MZintensitiy )SpectrumData[i]).intensity ;
float x = (mz - xstart)*Xunit + NETAREALEFTMARGIN ;
float y;
if (bZoomOut)
{
if (intensity * 100 / MaxIntensitiy > DisplayMaxY)
{
y = NETAREATOPMARGIN ;
}
else
{
y = HEIGHT - NETAREABOTTOMMARGIN - intensity * 100 * Yunit / MaxIntensitiy;
}
}
else
y = HEIGHT - NETAREABOTTOMMARGIN - intensity * 100 * Yunit / MaxIntensitiy;
Pen dataPen = new Pen (Brushes.Black ,1);
Pen BLinePen = new Pen(Brushes.Blue, 2);
Pen YLinePen = new Pen(Brushes.Red, 2);
Pen ALinePen = new Pen (Brushes.Green ,2);
Pen MLinePen = new Pen(Brushes.Gray , 2);
Font Numberfont = new Font("Arial", 9, FontStyle.Regular);
if (y < HEIGHT - NETAREABOTTOMMARGIN -20 && bShowLabel )
{
string strAnn = GetAnnotation(SpectrumData,i, Bs, Ys,PrecursorMZ,int.Parse (ChargeState ),bPhos );
if (strAnn.StartsWith("(b"))
{
g.DrawLine(BLinePen, x, y, x, (float)HEIGHT - NETAREABOTTOMMARGIN);
g.DrawString(strAnn, Numberfont, Brushes.Blue , new PointF(x, y));
}
else if (strAnn.StartsWith("(y"))
{
g.DrawLine(YLinePen, x, y, x, (float)HEIGHT - NETAREABOTTOMMARGIN);
g.DrawString(strAnn, Numberfont, Brushes.Red, new PointF(x, y));
}
else if (strAnn.StartsWith("(a"))
{
g.DrawLine(ALinePen, x, y, x, (float)HEIGHT - NETAREABOTTOMMARGIN);
g.DrawString(strAnn, Numberfont, Brushes.Green, new PointF(x, y));
}
else if (strAnn.StartsWith("(M") && y < HEIGHT - NETAREABOTTOMMARGIN -100)
{
g.DrawLine(MLinePen, x, y, x, (float)HEIGHT - NETAREABOTTOMMARGIN);
g.DrawString(strAnn, Numberfont, Brushes.Gray , new PointF(x, y));
}
else
{
g.DrawLine(dataPen, x, y, x, (float)HEIGHT - NETAREABOTTOMMARGIN);
}
//g.DrawString(strAnn, Numberfont, Brushes.Red, new PointF(x, y));
}
else
g.DrawLine(dataPen, x, y, x, (float)HEIGHT - NETAREABOTTOMMARGIN);
if (intensity == MaxIntensitiy)
{
//peak value point
GraphicsPath p = new GraphicsPath();
p.AddLine(x, (float)HEIGHT - NETAREABOTTOMMARGIN, x + XAxisScaleLength, (float)HEIGHT - NETAREABOTTOMMARGIN + XAxisScaleLength);
p.AddLine(x + XAxisScaleLength, (float)HEIGHT - NETAREABOTTOMMARGIN + XAxisScaleLength, x - XAxisScaleLength, (float)HEIGHT - NETAREABOTTOMMARGIN + XAxisScaleLength);
p.CloseFigure();
g.FillPath(Brushes.Red, p);
g.DrawString(mz.ToString(), Numberfont, Brushes.Red, x + XAxisScaleLength, (float)HEIGHT - NETAREABOTTOMMARGIN);
}
}
}
private void DrawData(Graphics g, float Xunit, float Yunit, int xstart)
{
PeptideMW PMW = new PeptideMW(PeptideSequence);
float[] Bs = PMW.GetPepFragmentBValues();
float[] Ys = PMW.GetPepFragmentYValues();
int charge1 = int.Parse (ChargeState);//(int) (PMW.GetMW2() / PrecursorMZ) +1;
bool bPhos1 = PMW.IsPhosphorylation();
PeptideMW PMW2 = new PeptideMW(AdditionalSequence);
float[] Bs2 = PMW2.GetPepFragmentBValues();
float[] Ys2 = PMW2.GetPepFragmentYValues();
float Precursor2 = PMW2.getPrecurMz2(charge1);
bool bPhos2 = PMW2.IsPhosphorylation();
Pen dataPen = new Pen(Brushes.Black, 1);
Pen BLinePen = new Pen(Brushes.Blue, 1);
Pen YLinePen = new Pen(Brushes.Red, 1);
Pen ALinePen = new Pen(Brushes.Green, 1);
Pen MLinePen = new Pen(Brushes.Gray , 1);
int LabelTolerance = 20;
if (bShowNoise)
{
BLinePen = new Pen(NoiseModeColor , 1);
YLinePen = new Pen(NoiseModeColor, 1);
ALinePen = new Pen(NoiseModeColor , 1);
MLinePen = new Pen(NoiseModeColor , 1);
LabelTolerance = 1;
}
//draw the library spectrum
int Count = SpectrumData.Count;
for (int i = 0; i < Count; i++)
{
float mz = ((MZintensitiy)SpectrumData[i]).mz;
float intensity = ((MZintensitiy)SpectrumData[i]).intensity;
float x = (mz - xstart) * Xunit + NETAREALEFTMARGIN;
float y;
if (bZoomOut)
{
if (intensity * 100 / MaxIntensitiy > DisplayMaxY)
{
y = NETAREATOPMARGIN;
}
else
{
y = XLinePos - intensity * 100 * Yunit / MaxIntensitiy;
}
}
else
y = XLinePos - intensity * 100 * Yunit / MaxIntensitiy;
Font Numberfont = new Font("Arial", 9, FontStyle.Regular);
if (y < XLinePos - LabelTolerance )
{
string strAnn = GetAnnotation(SpectrumData,i, Bs, Ys,bShowNoise,PrecursorMZ,charge1,bPhos1 );
if (strAnn.StartsWith("(b"))
{
if (bShowLabel)
{
g.DrawLine(BLinePen, x, y, x, (float)XLinePos);
g.DrawString(strAnn, Numberfont, Brushes.Blue, new PointF(x, y));
}
else
{
if (bShowNoise )
g.DrawLine(BLinePen, x, y, x, (float)XLinePos);
else
g.DrawLine(dataPen, x, y, x, (float)XLinePos);
}
}
else if (strAnn.StartsWith("(y"))
{
if (bShowLabel)
{
g.DrawLine(YLinePen, x, y, x, (float)XLinePos);
g.DrawString(strAnn, Numberfont, Brushes.Red, new PointF(x, y));
}
else
{
if (bShowNoise )
g.DrawLine(YLinePen, x, y, x, (float)XLinePos);
else
g.DrawLine(dataPen, x, y, x, (float)XLinePos);
}
}
else if (strAnn.StartsWith("(a"))
{
if (bShowLabel)
{
g.DrawLine(ALinePen, x, y, x, (float)XLinePos);
g.DrawString(strAnn, Numberfont, Brushes.Green, new PointF(x, y));
}
else
{
if (bShowNoise )
g.DrawLine(ALinePen, x, y, x, (float)XLinePos);
else
g.DrawLine(dataPen, x, y, x, (float)XLinePos);
}
}
else if (strAnn.StartsWith("(M") && y < XLinePos - 100)
{
if (bShowLabel)
{
g.DrawLine(MLinePen, x, y, x, (float)XLinePos);
g.DrawString(strAnn, Numberfont, Brushes.Gray, new PointF(x, y));
}
else
{
if (bShowNoise )
g.DrawLine(MLinePen, x, y, x, (float)XLinePos);
else
g.DrawLine(dataPen, x, y, x, (float)XLinePos);
}
}
else
{
g.DrawLine(dataPen, x, y, x, (float)XLinePos );
}
//g.DrawString(strAnn, Numberfont, Brushes.Red, new PointF(x, y));
}
else
g.DrawLine(dataPen, x, y, x, (float)XLinePos );
}
//draw the guest spectrum
Count = GuestSpectrumData.Count;
for (int i = 0; i < Count; i++)
{
float mz = ((MZintensitiy)GuestSpectrumData[i]).mz;
float intensity = ((MZintensitiy)GuestSpectrumData[i]).intensity;
float x = (mz - xstart) * Xunit + NETAREALEFTMARGIN;
float y;
if (bZoomOut)
{
if (intensity * 100 / GuestMaxIntensitiy > DisplayMaxY)
{
y = HEIGHT - NETAREABOTTOMMARGIN ;
}
else
{
y = XLinePos + intensity * 100 * Yunit / GuestMaxIntensitiy;
}
}
else
y = XLinePos + intensity * 100 * Yunit / GuestMaxIntensitiy;
Font Numberfont = new Font("Arial", 9, FontStyle.Regular);
if (y > XLinePos + LabelTolerance)
{
string strAnn = GetAnnotation(GuestSpectrumData,i, Bs2, Ys2,bShowNoise,Precursor2,charge1 ,bPhos2);
if (strAnn.StartsWith("(b"))
{
if (bShowLabel)
{
g.DrawLine(BLinePen, x, y, x, (float)XLinePos);
g.DrawString(strAnn, Numberfont, Brushes.Blue, new PointF(x, y - 10));
}
else
{
if (bShowNoise )
g.DrawLine(BLinePen, x, y, x, (float)XLinePos);
else
g.DrawLine(dataPen, x, y, x, (float)XLinePos);
}
}
else if (strAnn.StartsWith("(y"))
{
if (bShowLabel)
{
g.DrawLine(YLinePen, x, y, x, (float)XLinePos);
g.DrawString(strAnn, Numberfont, Brushes.Red, new PointF(x, y - 10));
}
else
{
if (bShowNoise )
g.DrawLine(YLinePen, x, y, x, (float)XLinePos);
else
g.DrawLine(dataPen, x, y, x, (float)XLinePos);
}
}
else if (strAnn.StartsWith("(a"))
{
if (bShowLabel)
{
g.DrawLine(ALinePen, x, y, x, (float)XLinePos);
g.DrawString(strAnn, Numberfont, Brushes.Green, new PointF(x, y - 10));
}
else
{
if (bShowNoise )
g.DrawLine(ALinePen, x, y, x, (float)XLinePos);
else
g.DrawLine(dataPen, x, y, x, (float)XLinePos);
}
}
else if (strAnn.StartsWith("(M") && y > XLinePos + 100)
{
if (bShowLabel)
{
g.DrawLine(MLinePen, x, y, x, (float)XLinePos);
g.DrawString(strAnn, Numberfont, Brushes.Gray, new PointF(x, y - 10));
}
else
{
if (bShowNoise )
g.DrawLine(MLinePen, x, y, x, (float)XLinePos);
else
g.DrawLine(dataPen, x, y, x, (float)XLinePos);
}
}
else
{
g.DrawLine(dataPen, x, y, x, (float)XLinePos);
}
//g.DrawString(strAnn, Numberfont, Brushes.Red, new PointF(x, y));
}
else
g.DrawLine(dataPen, x, y, x, (float)XLinePos);
}
}
// REAL MAGIC HERE! y- B-
private void DrawData(String pepseq)
{
PeptideMW PMW = new PeptideMW(pepseq);
float[] Bs = PMW.GetPepFragmentBValues();
float[] Ys = PMW.GetPepFragmentYValues();
bool bPhos = PMW.IsPhosphorylation();
int Count = sd.Count;
int i = 0;
for (i = 0; i < Count; i++)
{
float mz = ((SpectrumData)sd[i]).mz;
float intensity = ((SpectrumData)sd[i]).intensity;
/*
Pen dataPen = new Pen(Brushes.Black, 1);
Pen BLinePen = new Pen(Brushes.Blue, 2);
Pen YLinePen = new Pen(Brushes.Red, 2);
Pen ALinePen = new Pen(Brushes.Green, 2);
Pen MLinePen = new Pen(Brushes.Gray, 2);
Font Numberfont = new Font("Arial", 9, FontStyle.Regular);*/
string strAnn = GetAnnotation(sd, i, Bs, Ys, float.Parse(PrecursorMZ), int.Parse(ChargeState), bPhos);
if (strAnn.StartsWith("(b"))
{
sd[i].setColor("#0000ff");
sd[i].setTip(labelChargeCount(stripParenth(strAnn)));
//g.DrawLine(BLinePen, x, y, x, (float)HEIGHT - NETAREABOTTOMMARGIN);
//g.DrawString(strAnn, Numberfont, Brushes.Blue, new PointF(x, y));
}
else if (strAnn.StartsWith("(y"))
{
sd[i].setColor("#ff0000");
sd[i].setTip(labelChargeCount(stripParenth(strAnn)));
//g.DrawLine(YLinePen, x, y, x, (float)HEIGHT - NETAREABOTTOMMARGIN);
//g.DrawString(strAnn, Numberfont, Brushes.Red, new PointF(x, y));
}
else if (strAnn.StartsWith("(a"))
{
sd[i].setColor("#00ff00");
sd[i].setTip(labelChargeCount(stripParenth(strAnn)));
//g.DrawLine(ALinePen, x, y, x, (float)HEIGHT - NETAREABOTTOMMARGIN);
//g.DrawString(strAnn, Numberfont, Brushes.Green, new PointF(x, y));
}
else if (strAnn.StartsWith("(M"))
{
sd[i].setColor("#cccccc");
sd[i].setTip(labelChargeCount(stripParenth(strAnn)));
//g.DrawLine(MLinePen, x, y, x, (float)HEIGHT - NETAREABOTTOMMARGIN);
//g.DrawString(strAnn, Numberfont, Brushes.Gray, new PointF(x, y));
}
else
{
sd[i].setColor("#000000");
//g.DrawLine(dataPen, x, y, x, (float)HEIGHT - NETAREABOTTOMMARGIN);
}
//g.DrawString(strAnn, Numberfont, Brushes.Red, new PointF(x, y));
/*
if (intensity == MaxIntensitiy)
{
//peak value point
GraphicsPath p = new GraphicsPath();
p.AddLine(x, (float)HEIGHT - NETAREABOTTOMMARGIN, x + XAxisScaleLength, (float)HEIGHT - NETAREABOTTOMMARGIN + XAxisScaleLength);
p.AddLine(x + XAxisScaleLength, (float)HEIGHT - NETAREABOTTOMMARGIN + XAxisScaleLength, x - XAxisScaleLength, (float)HEIGHT - NETAREABOTTOMMARGIN + XAxisScaleLength);
p.CloseFigure();
g.FillPath(Brushes.Red, p);
g.DrawString(mz.ToString(), Numberfont, Brushes.Red, x + XAxisScaleLength, (float)HEIGHT - NETAREABOTTOMMARGIN);
}*/
}
}
