public VennProcessor(string[] inputPaths, VennVcfOptions parameters)
{
string outDir = parameters.OutputDirectory;
string consensusFileName = parameters.ConsensusFileName;
_parameters = parameters;
_inputPaths = inputPaths;
_outDir = outDir;
for (int i = 0; i < inputPaths.Length; i++)
{
InputFileNames[i] = Path.GetFileName(inputPaths[i]);
GuessSampleNameFromVcf(InputFileNames[i], out InputSampleNames[i], out InputSampleNums[i]);
}
if (!String.IsNullOrEmpty(consensusFileName))
{
//writeConsensusFile = true;
consensusFilePath = Path.Combine(outDir, consensusFileName);
consensusBuilder = new ConsensusBuilder(consensusFilePath, parameters);
}
}
public VennVcfOptionsParser()
{
Options = new VennVcfOptions();
}
public ConsensusBuilder(string consensusFilePath, VennVcfOptions options)
{
_consensusFilePath = consensusFilePath;
_options = options;
}