//[Ignore]
public void ShouldPersistToHDF5()
{
// Check and delete the HDF5 file here, NOT in TearDown, because we
// want the file to exist after the test run (contrary to everything
// unit-testing preaches) so that we can look at the file contents via
// h5dump to verify what it looks like; unfortunately, at this time,
// unit-testing HDF5 is a PITA (pain in the ass, for those of you
// who are acronymatically challenged), so approval testing
// is the next-best-thing we can do at the moment.
if (File.Exists("..\\..\\..\\ShouldPersistToHDF5.h5"))
{
File.Delete("..\\..\\..\\ShouldPersistToHDF5.h5");
}
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
using (var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldPersistToHDF5.h5", null, () => gID))
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary <string, object>();
props["key1"] = "value1";
props["key2"] = 2;
exp.BeginEpochGroup("label", "source identifier", new[] { "keyword1", "keyword2" }, props, guid,
time);
exp.Serialize(testEpoch);
exp.EndEpochGroup();
exp.Close();
}
H5.Close();
Approvals.VerifyFile("..\\..\\..\\ShouldPersistToHDF5.h5");
}
//[Ignore]
public void ShouldAutomaticallyCloseOpenEpochGroupsOnPersistorClose()
{
if (File.Exists("..\\..\\..\\ShouldAutomaticallyCloseOpenEpochGroupsOnPersistorClose.h5"))
{
File.Delete("..\\..\\..\\ShouldAutomaticallyCloseOpenEpochGroupsOnPersistorClose.h5");
}
var gID = new Guid("{FE5B733F-B3FB-4523-BDCC-CECB97D1CB0B}");
using (
var exp =
new EpochHDF5Persistor("..\\..\\..\\ShouldAutomaticallyCloseOpenEpochGroupsOnPersistorClose.h5",
null, () => gID))
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var guid2 = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97E");
exp.BeginEpochGroup("label1", "source1", new string[0], new Dictionary <string, object>(), guid,
time);
exp.BeginEpochGroup("label2", "source2", new string[0], new Dictionary <string, object>(), guid2,
time);
exp.Serialize(testEpoch);
exp.Close();
}
Approvals.VerifyFile("..\\..\\..\\ShouldAutomaticallyCloseOpenEpochGroupsOnPersistorClose.h5");
}
public void ShouldThrowExceptionIfNoOpenEpochGroup()
{
if (File.Exists("..\\..\\..\\ShouldThrowExceptionIfNoOpenEpochGroup.h5"))
{
File.Delete("..\\..\\..\\ShouldThrowExceptionIfNoOpenEpochGroup.h5");
}
using (var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldThrowExceptionIfNoOpenEpochGroup.h5", null, 9))
{
Assert.That(() => exp.Serialize(testEpoch), Throws.InvalidOperationException);
}
}
public void ShouldThrowInvalidOperationExcpetionClosingEpochGroupWithoutOpenEpochGroup()
{
if (File.Exists("epochtest.h5"))
{
File.Delete("epochtest.h5");
}
using (var exp = new EpochHDF5Persistor("epochtest.h5", null, 9))
{
Assert.That(() => exp.EndEpochGroup(), Throws.InvalidOperationException);
}
}
public void ShouldAllowMultipleOpenPersistors()
{
if (File.Exists("..\\..\\..\\ShouldAllowMultipleOpenPersistors1.h5"))
{
File.Delete("..\\..\\..\\ShouldAllowMultipleOpenPersistors1.h5");
}
if (File.Exists("..\\..\\..\\ShouldAllowMultipleOpenPersistors2.h5"))
{
File.Delete("..\\..\\..\\ShouldAllowMultipleOpenPersistors2.h5");
}
var gID = new Guid("{FE5B733F-B3FB-4523-BDCC-CECB97D1CB0B}");
using (var p1 = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowMultipleOpenPersistors1.h5", null, () => gID)
)
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var guid2 = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97E");
p1.BeginEpochGroup("label1", "source1", new string[0], new Dictionary <string, object>(), guid,
time);
p1.BeginEpochGroup("label2", "source2", new string[0], new Dictionary <string, object>(), guid2,
time);
using (
var p2 = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowMultipleOpenPersistors2.h5", null, () => gID)
)
{
p2.BeginEpochGroup("label1", "source1", new string[0], new Dictionary <string, object>(), guid,
time);
p2.BeginEpochGroup("label2", "source2", new string[0], new Dictionary <string, object>(), guid2,
time);
p2.Serialize(testEpoch);
p2.EndEpochGroup();
p2.EndEpochGroup();
}
p1.Serialize(testEpoch);
p1.EndEpochGroup();
p1.EndEpochGroup();
}
Approvals.VerifyFile("..\\..\\..\\ShouldAllowMultipleOpenPersistors1.h5");
Approvals.VerifyFile("..\\..\\..\\ShouldAllowMultipleOpenPersistors2.h5");
}
public void AppendToExistingHDF5()
{
if (File.Exists("AppendToExistingHDF5.h5"))
File.Delete("AppendToExistingHDF5.h5");
var gID = new Guid("a5839fe9-90ef-4e39-bf26-8f75048306a4");
using (var exp = new EpochHDF5Persistor("AppendToExistingHDF5.h5", null, () => gID))
{
var time = new DateTimeOffset(2011, 8, 22, 11, 12, 0, 0, TimeSpan.FromHours(-6));
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
exp.BeginEpochGroup("label1",
"source1",
new string[0],
new Dictionary<string, object>(),
guid,
time);
RunSingleEpoch(5000, 2, exp);
exp.EndEpochGroup();
exp.Close();
}
gID = new Guid("a5839fe9-90ef-4e39-bf26-8f75048306a5");
using (var exp = new EpochHDF5Persistor("AppendToExistingHDF5.h5", null, () => gID))
{
var time = new DateTimeOffset(2011, 8, 22, 11, 12, 0, 0, TimeSpan.FromHours(-6));
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97E");
exp.BeginEpochGroup("label1",
"source1",
new string[0],
new Dictionary<string, object>(),
guid,
time);
RunSingleEpoch(5000, 2, exp);
exp.EndEpochGroup();
exp.Close();
}
Approvals.VerifyFile("AppendToExistingHDF5.h5");
}
/// <summary>
/// Begin a new Epoch Group (i.e. a logical block of Epochs). As each Epoch Group is persisted
/// to a separate data file, this method creates the appropriate output file and
/// EpochPersistor instance.
/// </summary>
/// <param name="path">The name of the file into which to store the epoch; if the name
/// ends in ".xml", it will store the file using the EpochXMLPersistor, and if the name
/// ends in ".hdf5", it will store the file using the EpochHDF5Persistor. This file will
/// be overwritten if it already exists at this location.</param>
/// <param name="epochGroupLabel">Label for the new Epoch Group</param>
/// <param name="source">Identifier for EpochGroup's Source</param>
/// <param name="keywords"></param>
/// <param name="properties"></param>
/// <returns>The EpochPersistor instance to be used for saving Epochs</returns>
/// <see cref="RunEpoch"/>
public EpochPersistor BeginEpochGroup(string path, string epochGroupLabel, string source, IEnumerable <string> keywords, IDictionary <string, object> properties)
{
EpochPersistor result = null;
if (path.EndsWith(".xml"))
{
result = new EpochXMLPersistor(path);
}
else if (path.EndsWith(".hdf5"))
{
result = new EpochHDF5Persistor(path, null);
}
else
{
throw new ArgumentException(String.Format("{0} doesn't look like a legit Epoch filename", path));
}
var kws = keywords == null ? new string[0] : keywords.ToArray();
var props = properties ?? new Dictionary <string, object>();
result.BeginEpochGroup(epochGroupLabel, source, kws, props, Guid.NewGuid(), DateTime.Now);
return(result);
}
public void LongEpochPersistence(
[Values(5,60)] double epochDuration, //seconds
[Values(2)] int nEpochs
)
{
const decimal sampleRate = 10000m;
const string h5Path = "..\\..\\..\\LongEpochPersistence.h5";
if (File.Exists(h5Path))
File.Delete(h5Path);
Logging.ConfigureConsole();
Converters.Clear();
Converters.Register("V", "V",
// just an identity conversion for now, to pass Validate()
(IMeasurement m) => m);
HekaDAQInputStream.RegisterConverters();
HekaDAQOutputStream.RegisterConverters();
Assert.That(HekaDAQController.AvailableControllers().Count(), Is.GreaterThan(0));
foreach (var daq in HekaDAQController.AvailableControllers())
{
try
{
daq.InitHardware();
daq.SampleRate = new Measurement(sampleRate, "Hz");
var controller = new Controller {Clock = daq, DAQController = daq};
var dev0 = new UnitConvertingExternalDevice("Device0", "Manufacturer", controller,
new Measurement(0, "V"))
{
MeasurementConversionTarget = "V",
Clock = daq
};
dev0.BindStream((IDAQOutputStream) daq.GetStreams("ANALOG_OUT.0").First());
dev0.BindStream((IDAQInputStream) daq.GetStreams("ANALOG_IN.0").First());
for (int j = 0; j < nEpochs; j++)
{
// Setup Epoch
var e = new Epoch("HekaIntegration");
var nSamples = (int) TimeSpan.FromSeconds(epochDuration).Samples(daq.SampleRate);
IList<IMeasurement> stimData = (IList<IMeasurement>) Enumerable.Range(0, nSamples)
.Select(
i =>
new Measurement(
(decimal)
(8*
Math.Sin(((double) i)/
(nSamples/10.0))),
"V") as IMeasurement)
.ToList();
e.Stimuli[dev0] = new RenderedStimulus((string) "RenderedStimulus", (IDictionary<string, object>) new Dictionary<string, object>(),
(IOutputData) new OutputData(stimData, daq.SampleRate));
e.Responses[dev0] = new Response();
e.Background[dev0] = new Epoch.EpochBackground(new Measurement(0, "V"), daq.SampleRate);
//Run single epoch
using (var persistor = new EpochHDF5Persistor(h5Path, null, 9))
{
persistor.BeginEpochGroup("label", "source", new string[0], new Dictionary<string, object>(),
Guid.NewGuid(), DateTimeOffset.Now);
controller.RunEpoch(e, persistor);
persistor.EndEpochGroup();
}
Assert.That((bool) e.StartTime, Is.True);
Assert.That((DateTimeOffset) e.StartTime, Is.LessThanOrEqualTo(controller.Clock.Now));
Assert.That(e.Responses[dev0].Duration, Is.EqualTo(((TimeSpan) e.Duration))
.Within(TimeSpanExtensions.FromSamples(1,
daq.
SampleRate)));
//Assert.That(e.Responses[dev1].Duration, Is.EqualTo(((TimeSpan) e.Duration))
// .Within(TimeSpanExtensions.FromSamples(1,
// daq.
// SampleRate)));
}
}
finally
{
if (File.Exists(h5Path))
File.Delete(h5Path);
if (daq.HardwareReady)
daq.CloseHardware();
}
}
}
public void ShouldThrowInvalidOperationExcpetionClosingEpochGroupWithoutOpenEpochGroup()
{
if (File.Exists("epochtest.h5"))
File.Delete("epochtest.h5");
using (var exp = new EpochHDF5Persistor("epochtest.h5", null, 9))
{
Assert.That(() => exp.EndEpochGroup(), Throws.InvalidOperationException);
}
}
public void ShouldThrowExceptionIfNoOpenEpochGroup()
{
if (File.Exists("..\\..\\..\\ShouldThrowExceptionIfNoOpenEpochGroup.h5"))
File.Delete("..\\..\\..\\ShouldThrowExceptionIfNoOpenEpochGroup.h5");
using (var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldThrowExceptionIfNoOpenEpochGroup.h5", null, 9))
{
Assert.That(() => exp.Serialize(testEpoch), Throws.InvalidOperationException);
}
}
public void ShouldPersistToHDF5()
{
// Check and delete the HDF5 file here, NOT in TearDown, because we
// want the file to exist after the test run (contrary to everything
// unit-testing preaches) so that we can look at the file contents via
// h5dump to verify what it looks like; unfortunately, at this time,
// unit-testing HDF5 is a PITA (pain in the ass, for those of you
// who are acronymatically challenged), so approval testing
// is the next-best-thing we can do at the moment.
if (File.Exists("..\\..\\..\\ShouldPersistToHDF5.h5"))
File.Delete("..\\..\\..\\ShouldPersistToHDF5.h5");
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
using (var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldPersistToHDF5.h5", null, () => gID))
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary<string, object>();
props["key1"] = "value1";
props["key2"] = 2;
exp.BeginEpochGroup("label", "source identifier", new[] {"keyword1", "keyword2"}, props, guid,
time);
exp.Serialize(testEpoch);
exp.EndEpochGroup();
exp.Close();
}
H5.Close();
Approvals.VerifyFile("..\\..\\..\\ShouldPersistToHDF5.h5");
}
public void ShouldCompressNumericData()
{
String uncompressedPath = "ShouldCompressNumericData_0.h5";
String compressedPath = "ShouldCompressNumericData_9.h5";
long uncompressedLength = 0;
long compressedLength = 0;
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
try
{
using (var exp = new EpochHDF5Persistor(uncompressedPath, null, () => gID, 0))
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary<string, object>();
props["key1"] = "value1";
props["key2"] = 2;
exp.BeginEpochGroup("label", "source identifier", new[] {"keyword1", "keyword2"}, props, guid,
time);
exp.Serialize(testEpoch);
exp.EndEpochGroup();
exp.Close();
}
uncompressedLength = new FileInfo(uncompressedPath).Length;
}
finally
{
if (File.Exists(uncompressedPath))
File.Delete(uncompressedPath);
}
gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5386}");
try
{
using (var exp = new EpochHDF5Persistor(compressedPath, null, () => gID, 9))
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97E");
var props = new Dictionary<string, object>();
props["key1"] = "value1";
props["key2"] = 2;
exp.BeginEpochGroup("label", "source identifier", new[] {"keyword1", "keyword2"}, props, guid,
time);
exp.Serialize(testEpoch);
exp.EndEpochGroup();
exp.Close();
}
compressedLength = new FileInfo(compressedPath).Length;
}
finally
{
if (File.Exists(compressedPath))
File.Delete(compressedPath);
}
Console.WriteLine("{0} => {1} bytes", uncompressedLength, compressedLength);
Assert.That(compressedLength, Is.LessThan(uncompressedLength/2));
}
public void ShouldAutomaticallyCloseOpenEpochGroupsOnPersistorClose()
{
if (File.Exists("..\\..\\..\\ShouldAutomaticallyCloseOpenEpochGroupsOnPersistorClose.h5"))
File.Delete("..\\..\\..\\ShouldAutomaticallyCloseOpenEpochGroupsOnPersistorClose.h5");
var gID = new Guid("{FE5B733F-B3FB-4523-BDCC-CECB97D1CB0B}");
using (
var exp =
new EpochHDF5Persistor("..\\..\\..\\ShouldAutomaticallyCloseOpenEpochGroupsOnPersistorClose.h5",
null, () => gID))
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var guid2 = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97E");
exp.BeginEpochGroup("label1", "source1", new string[0], new Dictionary<string, object>(), guid,
time);
exp.BeginEpochGroup("label2", "source2", new string[0], new Dictionary<string, object>(), guid2,
time);
exp.Serialize(testEpoch);
exp.Close();
}
Approvals.VerifyFile("..\\..\\..\\ShouldAutomaticallyCloseOpenEpochGroupsOnPersistorClose.h5");
}
public void ShouldAllowNumericEpochParameters()
{
if (File.Exists("..\\..\\..\\ShouldAllowNumericEpochParameters.h5"))
File.Delete("..\\..\\..\\ShouldAllowNumericEpochParameters.h5");
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
using (var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowNumericEpochParameters.h5", null, () => gID)
)
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary<string, object>();
props["int"] = 2;
props["float"] = 2.0f;
props["double"] = 2.0d;
props["decimal"] = 2.0m;
props["array"] = new[] {1.0, 2.0, 3.0};
props["short"] = (short) 2;
props["unit16"] = (UInt16) 1;
props["uint32"] = (UInt32) 2;
props["byte"] = (byte) 1;
props["bool"] = true;
const string protocolID = "Epoch.Fixture";
Dictionary<string, object> parameters = props;
dev1 = new UnitConvertingExternalDevice(dev1Name, "DEVICECO", new Measurement(0, "V"));
dev2 = new UnitConvertingExternalDevice(dev2Name, "DEVICECO", new Measurement(0, "V"));
var stream1 = new DAQInputStream("Stream1");
var stream2 = new DAQInputStream("Stream2");
var stimParameters = new Dictionary<string, object>();
stimParameters[param1] = value1;
stimParameters[param2] = value2;
var srate = new Measurement(1000, "Hz");
List<Measurement> samples =
Enumerable.Range(0, 10000).Select(i => new Measurement((decimal) Math.Sin((double) i/100), "V")).
ToList();
var stimData = new OutputData(samples, srate, false);
var stim1 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var stim2 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var e = new Epoch(protocolID, parameters);
e.Stimuli[dev1] = stim1;
e.Stimuli[dev2] = stim2;
DateTimeOffset start = DateTimeOffset.Parse("1/11/2011 6:03:29 PM -08:00");
// Do this to match the XML stored in the EpochXML.txt resource
e.StartTime = Maybe<DateTimeOffset>.Yes(start);
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), new Measurement(1000, "Hz"));
e.Background[dev2] = new Epoch.EpochBackground(new Measurement(1, "V"), new Measurement(1000, "Hz"));
e.Responses[dev1] = new Response();
e.Responses[dev2] = new Response();
var streamConfig = new Dictionary<string, object>();
streamConfig[param1] = value1;
var devConfig = new Dictionary<string, object>();
devConfig[param2] = value2;
IInputData responseData1 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream1, streamConfig)
.DataWithExternalDeviceConfiguration(dev1, devConfig);
IInputData responseData2 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream2, streamConfig)
.DataWithExternalDeviceConfiguration(dev2, devConfig);
e.Responses[dev1].AppendData(responseData1);
e.Responses[dev2].AppendData(responseData2);
e.Keywords.Add(kw1);
e.Keywords.Add(kw2);
exp.BeginEpochGroup("label", "source identifier", new[] {"keyword1", "keyword2"}, props, guid,
time);
exp.Serialize(e);
exp.EndEpochGroup();
exp.Close();
}
H5.Close();
Approvals.VerifyFile("..\\..\\..\\ShouldAllowNumericEpochParameters.h5");
}
public void ShouldAllowMultipleOpenPersistors()
{
if (File.Exists("..\\..\\..\\ShouldAllowMultipleOpenPersistors1.h5"))
File.Delete("..\\..\\..\\ShouldAllowMultipleOpenPersistors1.h5");
if (File.Exists("..\\..\\..\\ShouldAllowMultipleOpenPersistors2.h5"))
File.Delete("..\\..\\..\\ShouldAllowMultipleOpenPersistors2.h5");
var gID = new Guid("{FE5B733F-B3FB-4523-BDCC-CECB97D1CB0B}");
using (var p1 = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowMultipleOpenPersistors1.h5", null, () => gID)
)
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var guid2 = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97E");
p1.BeginEpochGroup("label1", "source1", new string[0], new Dictionary<string, object>(), guid,
time);
p1.BeginEpochGroup("label2", "source2", new string[0], new Dictionary<string, object>(), guid2,
time);
using (
var p2 = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowMultipleOpenPersistors2.h5", null, () => gID)
)
{
p2.BeginEpochGroup("label1", "source1", new string[0], new Dictionary<string, object>(), guid,
time);
p2.BeginEpochGroup("label2", "source2", new string[0], new Dictionary<string, object>(), guid2,
time);
p2.Serialize(testEpoch);
p2.EndEpochGroup();
p2.EndEpochGroup();
}
p1.Serialize(testEpoch);
p1.EndEpochGroup();
p1.EndEpochGroup();
}
Approvals.VerifyFile("..\\..\\..\\ShouldAllowMultipleOpenPersistors1.h5");
Approvals.VerifyFile("..\\..\\..\\ShouldAllowMultipleOpenPersistors2.h5");
}
public void ShouldAllowLongStringEpochParameters()
{
if (File.Exists("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5"))
File.Delete("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5");
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
using (
var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5", null, () => gID)
)
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary<string, object>();
props["key1"] =
"1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890";
//100 elements
props["key2"] = 2;
const string protocolID = "Epoch.Fixture";
Dictionary<string, object> parameters = props;
dev1 = new UnitConvertingExternalDevice(dev1Name, "DEVICECO", new Measurement(0, "V"));
dev2 = new UnitConvertingExternalDevice(dev2Name, "DEVICECO", new Measurement(0, "V"));
var stream1 = new DAQInputStream("Stream1");
var stream2 = new DAQInputStream("Stream2");
var stimParameters = new Dictionary<string, object>();
stimParameters[param1] = value1;
stimParameters[param2] = value2;
var srate = new Measurement(1000, "Hz");
List<Measurement> samples =
Enumerable.Range(0, 10000).Select(i => new Measurement((decimal) Math.Sin((double) i/100), "mV")).
ToList();
var stimData = new OutputData(samples, srate, false);
var stim1 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var stim2 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var e = new Epoch(protocolID, parameters);
e.Stimuli[dev1] = stim1;
e.Stimuli[dev2] = stim2;
DateTimeOffset start = DateTimeOffset.Parse("1/11/2011 6:03:29 PM -08:00");
// Do this to match the XML stored in the EpochXML.txt resource
e.StartTime = Maybe<DateTimeOffset>.Yes(start);
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), new Measurement(1000, "Hz"));
e.Background[dev2] = new Epoch.EpochBackground(new Measurement(1, "V"), new Measurement(1000, "Hz"));
e.Responses[dev1] = new Response();
e.Responses[dev2] = new Response();
var streamConfig = new Dictionary<string, object>();
streamConfig[param1] = value1;
var devConfig = new Dictionary<string, object>();
devConfig[param2] = value2;
IInputData responseData1 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream1, streamConfig)
.DataWithExternalDeviceConfiguration(dev1, devConfig);
IInputData responseData2 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream2, streamConfig)
.DataWithExternalDeviceConfiguration(dev2, devConfig);
e.Responses[dev1].AppendData(responseData1);
e.Responses[dev2].AppendData(responseData2);
e.Keywords.Add(kw1);
e.Keywords.Add(kw2);
exp.BeginEpochGroup("label", "source identifier", new[] {"keyword1", "keyword2"}, props, guid,
time);
exp.Serialize(e);
exp.EndEpochGroup(time.AddMilliseconds(100));
exp.Close();
}
H5.Close();
var startInfo = new ProcessStartInfo(@"..\..\..\..\..\..\externals\HDF5\bin\h5dump",
@" --xml ..\..\..\ShouldAllowLongStringEpochParameters.h5");
startInfo.RedirectStandardOutput = true;
startInfo.UseShellExecute = false;
Process proc = Process.Start(startInfo);
Approvals.VerifyXml(proc.StandardOutput.ReadToEnd());
}
public void ShouldAllowLongStringEpochParameters()
{
if (File.Exists("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5"))
{
File.Delete("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5");
}
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
using (
var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowLongStringEpochParameters.h5", null, () => gID)
)
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary <string, object>();
props["key1"] =
"1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890";
//100 elements
props["key2"] = 2;
const string protocolID = "Epoch.Fixture";
Dictionary <string, object> parameters = props;
dev1 = new UnitConvertingExternalDevice(dev1Name, "DEVICECO", new Measurement(0, "V"));
dev2 = new UnitConvertingExternalDevice(dev2Name, "DEVICECO", new Measurement(0, "V"));
var stream1 = new DAQInputStream("Stream1");
var stream2 = new DAQInputStream("Stream2");
var stimParameters = new Dictionary <string, object>();
stimParameters[param1] = value1;
stimParameters[param2] = value2;
var srate = new Measurement(1000, "Hz");
List <Measurement> samples =
Enumerable.Range(0, 10000).Select(i => new Measurement((decimal)Math.Sin((double)i / 100), "mV")).
ToList();
var stimData = new OutputData(samples, srate, false);
var stim1 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var stim2 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var e = new Epoch(protocolID, parameters);
e.Stimuli[dev1] = stim1;
e.Stimuli[dev2] = stim2;
DateTimeOffset start = DateTimeOffset.Parse("1/11/2011 6:03:29 PM -08:00");
// Do this to match the XML stored in the EpochXML.txt resource
e.StartTime = Maybe <DateTimeOffset> .Yes(start);
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), new Measurement(1000, "Hz"));
e.Background[dev2] = new Epoch.EpochBackground(new Measurement(1, "V"), new Measurement(1000, "Hz"));
e.Responses[dev1] = new Response();
e.Responses[dev2] = new Response();
var streamConfig = new Dictionary <string, object>();
streamConfig[param1] = value1;
var devConfig = new Dictionary <string, object>();
devConfig[param2] = value2;
IInputData responseData1 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream1, streamConfig)
.DataWithExternalDeviceConfiguration(dev1, devConfig);
IInputData responseData2 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream2, streamConfig)
.DataWithExternalDeviceConfiguration(dev2, devConfig);
e.Responses[dev1].AppendData(responseData1);
e.Responses[dev2].AppendData(responseData2);
e.Keywords.Add(kw1);
e.Keywords.Add(kw2);
exp.BeginEpochGroup("label", "source identifier", new[] { "keyword1", "keyword2" }, props, guid,
time);
exp.Serialize(e);
exp.EndEpochGroup(time.AddMilliseconds(100));
exp.Close();
}
H5.Close();
var startInfo = new ProcessStartInfo(@"..\..\..\..\..\..\externals\HDF5\bin\h5dump",
@" --xml ..\..\..\ShouldAllowLongStringEpochParameters.h5");
startInfo.RedirectStandardOutput = true;
startInfo.UseShellExecute = false;
Process proc = Process.Start(startInfo);
Approvals.VerifyXml(proc.StandardOutput.ReadToEnd());
}
public void ShouldAllowNumericEpochParameters()
{
if (File.Exists("..\\..\\..\\ShouldAllowNumericEpochParameters.h5"))
{
File.Delete("..\\..\\..\\ShouldAllowNumericEpochParameters.h5");
}
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
using (var exp = new EpochHDF5Persistor("..\\..\\..\\ShouldAllowNumericEpochParameters.h5", null, () => gID)
)
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary <string, object>();
props["int"] = 2;
props["float"] = 2.0f;
props["double"] = 2.0d;
props["decimal"] = 2.0m;
props["array"] = new[] { 1.0, 2.0, 3.0 };
props["short"] = (short)2;
props["unit16"] = (UInt16)1;
props["uint32"] = (UInt32)2;
props["byte"] = (byte)1;
props["bool"] = true;
const string protocolID = "Epoch.Fixture";
Dictionary <string, object> parameters = props;
dev1 = new UnitConvertingExternalDevice(dev1Name, "DEVICECO", new Measurement(0, "V"));
dev2 = new UnitConvertingExternalDevice(dev2Name, "DEVICECO", new Measurement(0, "V"));
var stream1 = new DAQInputStream("Stream1");
var stream2 = new DAQInputStream("Stream2");
var stimParameters = new Dictionary <string, object>();
stimParameters[param1] = value1;
stimParameters[param2] = value2;
var srate = new Measurement(1000, "Hz");
List <Measurement> samples =
Enumerable.Range(0, 10000).Select(i => new Measurement((decimal)Math.Sin((double)i / 100), "V")).
ToList();
var stimData = new OutputData(samples, srate, false);
var stim1 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var stim2 = new RenderedStimulus("RenderedStimulus", stimParameters, stimData);
//.Data does not need to be persisted
var e = new Epoch(protocolID, parameters);
e.Stimuli[dev1] = stim1;
e.Stimuli[dev2] = stim2;
DateTimeOffset start = DateTimeOffset.Parse("1/11/2011 6:03:29 PM -08:00");
// Do this to match the XML stored in the EpochXML.txt resource
e.StartTime = Maybe <DateTimeOffset> .Yes(start);
e.Background[dev1] = new Epoch.EpochBackground(new Measurement(0, "V"), new Measurement(1000, "Hz"));
e.Background[dev2] = new Epoch.EpochBackground(new Measurement(1, "V"), new Measurement(1000, "Hz"));
e.Responses[dev1] = new Response();
e.Responses[dev2] = new Response();
var streamConfig = new Dictionary <string, object>();
streamConfig[param1] = value1;
var devConfig = new Dictionary <string, object>();
devConfig[param2] = value2;
IInputData responseData1 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream1, streamConfig)
.DataWithExternalDeviceConfiguration(dev1, devConfig);
IInputData responseData2 = new InputData(samples, srate, start)
.DataWithStreamConfiguration(stream2, streamConfig)
.DataWithExternalDeviceConfiguration(dev2, devConfig);
e.Responses[dev1].AppendData(responseData1);
e.Responses[dev2].AppendData(responseData2);
e.Keywords.Add(kw1);
e.Keywords.Add(kw2);
exp.BeginEpochGroup("label", "source identifier", new[] { "keyword1", "keyword2" }, props, guid,
time);
exp.Serialize(e);
exp.EndEpochGroup();
exp.Close();
}
H5.Close();
Approvals.VerifyFile("..\\..\\..\\ShouldAllowNumericEpochParameters.h5");
}
public void ShouldCompressNumericData()
{
String uncompressedPath = "ShouldCompressNumericData_0.h5";
String compressedPath = "ShouldCompressNumericData_9.h5";
long uncompressedLength = 0;
long compressedLength = 0;
var gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5385}");
try
{
using (var exp = new EpochHDF5Persistor(uncompressedPath, null, () => gID, 0))
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97D");
var props = new Dictionary <string, object>();
props["key1"] = "value1";
props["key2"] = 2;
exp.BeginEpochGroup("label", "source identifier", new[] { "keyword1", "keyword2" }, props, guid,
time);
exp.Serialize(testEpoch);
exp.EndEpochGroup();
exp.Close();
}
uncompressedLength = new FileInfo(uncompressedPath).Length;
}
finally
{
if (File.Exists(uncompressedPath))
{
File.Delete(uncompressedPath);
}
}
gID = new Guid("{2F2719F7-4A8C-4C22-9698-BE999DBC5386}");
try
{
using (var exp = new EpochHDF5Persistor(compressedPath, null, () => gID, 9))
{
var time = new DateTimeOffset(1000, TimeSpan.Zero);
var guid = new Guid("053C64D4-ED7A-4128-AA43-ED115716A97E");
var props = new Dictionary <string, object>();
props["key1"] = "value1";
props["key2"] = 2;
exp.BeginEpochGroup("label", "source identifier", new[] { "keyword1", "keyword2" }, props, guid,
time);
exp.Serialize(testEpoch);
exp.EndEpochGroup();
exp.Close();
}
compressedLength = new FileInfo(compressedPath).Length;
}
finally
{
if (File.Exists(compressedPath))
{
File.Delete(compressedPath);
}
}
Console.WriteLine("{0} => {1} bytes", uncompressedLength, compressedLength);
Assert.That(compressedLength, Is.LessThan(uncompressedLength / 2));
}