/// <summary>
/// Parse command line arguments for Length anomaly regions command
/// </summary>
/// <param name="args">Array of command line arguments.</param>
private static void LengthAnomalyOption(string[] args)
{
LengthAnomaly options = new LengthAnomaly();
if (args.Length > 2)
{
if (options.Usage)
{
DisplayErrorMessage(Resources.LengthAnomalyHelp);
}
else
{
options.LengthAnamoly(args[0],
float.Parse(args[1]), float.Parse(args[2]));
}
}
else
{
DisplayErrorMessage(Resources.LengthAnomalyHelp);
}
}
/// <summary>
/// Parse command line arguments for Length anomaly regions command
/// </summary>
/// <param name="args">Array of command line arguments.</param>
private static void LengthAnomalyOption(string[] args)
{
LengthAnomaly options = new LengthAnomaly();
if (args.Length > 2)
{
CommandLineArguments parser = new CommandLineArguments();
// Add the parameters
parser.Parameter(ArgumentType.Optional, "SAMInput", ArgumentValueType.Bool, "S", "Input is SAM format");
parser.Parameter(ArgumentType.Optional, "Help", ArgumentValueType.Bool, "", "");
try
{
parser.Parse(args, options);
}
catch (ArgumentParserException ex)
{
DisplayErrorMessage(ex.Message);
DisplayErrorMessage(Resources.LengthAnomalyHelp);
Environment.Exit(-1);
}
if (options.Help)
{
DisplayErrorMessage(Resources.LengthAnomalyHelp);
}
else
{
options.LengthAnamoly(args[0],
float.Parse(args[1]), float.Parse(args[2]));
}
}
else
{
DisplayErrorMessage(Resources.LengthAnomalyHelp);
}
}
/// <summary>
/// Parse command line arguments for Length anomaly regions command
/// </summary>
/// <param name="args">Array of command line arguments.</param>
private static void LengthAnomalyOption(string[] args)
{
LengthAnomaly options = new LengthAnomaly();
if (args.Length > 2)
{
CommandLineArguments parser = new CommandLineArguments();
// Add the parameters
parser.Parameter(ArgumentType.Optional, "SAMInput", ArgumentValueType.Bool, "S", "Input is SAM format");
parser.Parameter(ArgumentType.Optional, "Help", ArgumentValueType.Bool, "", "");
try
{
parser.Parse(args, options);
}
catch (ArgumentParserException ex)
{
DisplayErrorMessage(ex.Message);
DisplayErrorMessage(Resources.LengthAnomalyHelp);
Environment.Exit(-1);
}
if (options.Help)
{
DisplayErrorMessage(Resources.LengthAnomalyHelp);
}
else
{
options.LengthAnamoly(args[0],
float.Parse(args[1]), float.Parse(args[2]));
}
}
else
{
DisplayErrorMessage(Resources.LengthAnomalyHelp);
}
}
