public void AddMissedCleavages()
{
if (this.maxMissedCleavages > 0)
{
var missedList = new List <DigestRangeLocation>();
for (int i = 0; i < this.peptideQue.Count; i++)
{
DigestRangeLocation loc = this.peptideQue[i];
for (int iMiss = 0; iMiss < this.maxMissedCleavages; iMiss++)
{
int j = i + 1 + iMiss;
if (j == this.peptideQue.Count)
{
break;
}
RangeLocation loc2 = this.peptideQue[j];
missedList.Add(new DigestRangeLocation(loc.Min, loc2.Max, iMiss + 1));
}
}
this.peptideQue.AddRange(missedList);
}
}
public void TestParse()
{
RangeLocation expect = new RangeLocation(30, 600);
Assert.AreEqual(expect, RangeLocation.Parse("30-600"));
Assert.AreEqual(expect, RangeLocation.Parse("30.5, 600.1"));
}
public bool Accept(RangeLocation rl)
{
string peptide = this.sequence.Substring(rl.Min - 1, rl.Max - rl.Min + 1);
double mass = this.aminoacids.AveragePeptideMass(peptide);
return(mass >= this.minWeight && mass <= this.maxWeight);
}
public bool Accept(RangeLocation rl)
{
string peptide = this.sequence.Substring(rl.Min - 1, rl.Max - rl.Min + 1);
if (0 <= peptide.IndexOfAny(this.exceptAminoacids))
{
return(false);
}
return(true);
}
public bool Accept(RangeLocation rl)
{
for (int index = rl.Min - 1; index <= rl.Max - 1; index++)
{
if (this.isNglycan[index])
{
return(true);
}
}
return(false);
}
public bool Accept(RangeLocation rl)
{
foreach (IRangeLocationFilter filter in this.filters)
{
if (!filter.Accept(rl))
{
return(false);
}
}
return(true);
}
public RangeLocation(RangeLocation source)
{
this.min = source.min;
this.max = source.max;
}
public void TestParseExceptionDouble()
{
RangeLocation.Parse("3.1.1, 200");
}
public void TestParseExceptionRegex()
{
RangeLocation.Parse("3");
}
public bool Accept(RangeLocation rl)
{
return(rl.Max - rl.Min + 1 >= this.minLength);
}