protected void OnUpdatePeptideItem(UpdateMRMPairedPeptideItemEventArgs e)
{
if (PeptideItemUpdate != null)
{
PeptideItemUpdate(this, e);
}
}
private void DoUpdateFileModePeptide()
{
var fileItem = GetFileModeItem();
UpdateMRMPairedPeptideItemEventArgs args = new UpdateMRMPairedPeptideItemEventArgs(fileItem.PairedPeptide, viewOption);
OnUpdateFileModePeptideItem(args);
}
private SrmPairedPeptideItem DoUpdatePeptide()
{
var result = GetPeptide();
UpdateMRMPairedPeptideItemEventArgs args = new UpdateMRMPairedPeptideItemEventArgs(result, new SrmViewOption()
{
ViewGreenLine = true, ViewType = lastType
});
OnUpdatePeptideItem(args);
return(result);
}
private void DoUpdateCompoundGraph()
{
if (compoundPeptide == null)
{
return;
}
UpdateMRMPairedPeptideItemEventArgs args = new UpdateMRMPairedPeptideItemEventArgs(compoundPeptide, viewOption);
if (CompoundModePeptideItemUpdate != null)
{
CompoundModePeptideItemUpdate(this, args);
}
}
private SrmPairedPeptideItem DoUpdatePeptide()
{
var result = GetPeptide();
if (result != null)
{
UpdateMRMPairedPeptideItemEventArgs args = new UpdateMRMPairedPeptideItemEventArgs(result, new SrmViewOption()
{
ViewGreenLine = true, ViewType = _currentDisplayType
});
OnUpdatePeptideItem(args);
}
return(result);
}
private void UpdateGraph()
{
if (currentCompound == null)
{
return;
}
UpdateMRMPairedPeptideItemEventArgs args = new UpdateMRMPairedPeptideItemEventArgs(currentCompound, new SrmViewOption()
{
ViewGreenLine = true, ViewType = currentDisplayType
});
peptideGraph.Update(this, args);
rtGraph.Update(this, args);
scanGraphs.ForEach(m => m.Update(this, args));
}
public void Update(object sender, UpdateMRMPairedPeptideItemEventArgs e)
{
MasterPane myMaster = zgcGraph.MasterPane;
myMaster.Border.IsVisible = false;
myMaster.PaneList.Clear();
try
{
myMaster.Margin.All = 1;
myMaster.InnerPaneGap = 1;
myMaster.Title.IsVisible = false;
myMaster.Legend.IsVisible = false;
var summary = e.Item;
if (summary == null)
{
return;
}
for (int i = 0; i < summary.ProductIonPairs.Count; i++)
{
if (summary.ProductIonPairs[i] == null)
{
continue;
}
if (string.IsNullOrEmpty(FileName) || FileName.Equals(summary.ProductIonPairs[i].FileName))
{
GraphPane panel = new GraphPane();
myMaster.Add(panel);
ZedGraphMRMProductIonScans scan = new ZedGraphMRMProductIonScans(zgcGraph, panel);
scan.Update(null, new UpdateMRMPairedProductIonEventArgs(summary.ProductIonPairs[i], e.ViewOption));
}
}
myMaster.SetLayout(g, PaneLayout.SquareColPreferred);
zgcGraph.AxisChange();
}
finally
{
ZedGraphicExtension.UpdateGraph(this.zgcGraph);
}
}
public void Update(object sender, UpdateMRMPairedPeptideItemEventArgs e)
{
MasterPane myMaster = zgcGraph.MasterPane;
myMaster.Border.IsVisible = false;
myMaster.PaneList.Clear();
bool updated = false;
try
{
myMaster.Margin.All = 1;
myMaster.InnerPaneGap = 1;
myMaster.Title.IsVisible = false;
myMaster.Legend.IsVisible = false;
var summary = e.Item;
if (summary == null)
{
return;
}
var ion = summary.ProductIonPairs.FirstOrDefault(m => m != null && m.FileName.Equals(FileName));
if (ion == null)
{
return;
}
ZedGraphMRMProductIonScansAndRegression scan = new ZedGraphMRMProductIonScansAndRegression(zgcGraph, g);
scan.Update(null, new UpdateMRMPairedProductIonEventArgs(ion, e.ViewOption));
updated = true;
}
finally
{
if (!updated)
{
ZedGraphicExtension.UpdateGraph(this.zgcGraph);
}
}
}
public void Update(object sender, UpdateMRMPairedPeptideItemEventArgs e)
{
panel.ClearData();
var peptide = e.Item;
if (peptide == null || peptide.ProductIonPairs.Count == 0)
{
return;
}
var option = e.ViewOption;
panel.Tag = peptide;
panel.ClearData();
try
{
foreach (var summary in peptide.ProductIonPairs)
{
if (summary.Light != null && summary.Heavy != null && !option.ViewGreenLine)
{
AddAbsoluteCurve(summary.Light, "Light", Color.Blue, DashStyle.Solid);
AddAbsoluteCurve(summary.Heavy, "Heavy", Color.Red, DashStyle.Dot);
}
}
this.panel.Title.IsVisible = false;
this.panel.YAxis.Scale.Min = 0;
if (option.ViewType == DisplayType.PerfectSize || option.ViewType == DisplayType.FullHeight)
{
var range = (from summary in peptide.ProductIonPairs
from scan in summary.Light.Intensities
where scan.Enabled
orderby scan.RetentionTime
select scan.RetentionTime).ToList();
if (range.Count > 0)
{
var minRt = range.First() - 1;
var maxRt = range.Last() + 1;
panel.XAxis.Scale.Min = minRt;
panel.XAxis.Scale.Max = maxRt;
if (option.ViewType == DisplayType.PerfectSize)
{
var maxIntensity = Math.Max((from summary in peptide.ProductIonPairs
from scan in summary.Light.Intensities
where scan.Enabled
select scan.Intensity).Max(),
(from summary in peptide.ProductIonPairs
from scan in summary.Heavy.Intensities
where scan.Enabled
select scan.Intensity).Max());
panel.YAxis.Scale.Max = maxIntensity * 1.2;
}
}
}
}
finally
{
ZedGraphicExtension.UpdateGraph(this.zgcGraph);
}
}
public void UpdatePeptide(object sender, UpdateMRMPairedPeptideItemEventArgs e)
{
var s = e.Item;
gvProductPair.DataSource = e.Item.ProductIonPairs;
}
public void Update(object sender, UpdateMRMPairedPeptideItemEventArgs e)
{
var summary = e.Item;
if (summary == null)
{
throw new ArgumentNullException("UpdateMRMPairedPeptideItemEventArgs.Item cannot be null");
}
var myMaster = zgcGraph.GraphPane;
myMaster.Title.Text = "Retention time ranges";
myMaster.XAxis.Title.Text = "Files";
myMaster.YAxis.Title.Text = "Retention time";
myMaster.CurveList.Clear();
try
{
var splRange = new PointPairList();
var splEnabled = new PointPairList();
var splAll = new StockPointList();
List <string> filenames = new List <string>();
int index = 0;
List <double> median = new List <double>();
for (int i = 0; i < summary.ProductIonPairs.Count; i++)
{
if (summary.ProductIonPairs[i] == null)
{
continue;
}
index++;
filenames.Add(summary.ProductIonPairs[i].FileName);
var ints = summary.ProductIonPairs[i].Light.Intensities;
var low = ints.First().RetentionTime;
var high = ints.Last().RetentionTime;
var firstEnabled = ints.Find(m => m.Enabled);
var open = firstEnabled == null ? (low + high) / 2 : firstEnabled.RetentionTime;
var lastEnabled = ints.FindLast(m => m.Enabled);
var close = lastEnabled == null ? (low + high) / 2 : lastEnabled.RetentionTime;
median.Add((open + close) / 2);
splRange.Add(new PointPair(index, low, high));
splEnabled.Add(new PointPair(index, open, close));
splAll.Add(index, high, low, open, close, 1000);
}
myMaster.XAxis.Type = AxisType.Text;
myMaster.XAxis.Scale.TextLabels = filenames.ToArray();
var item = myMaster.AddJapaneseCandleStick("", splAll);
item.Stick.RisingFill = new Fill(Color.Red);
item.Stick.FallingFill = new Fill(Color.Blue);
zgcGraph.AxisChange();
}
finally
{
ZedGraphicExtension.UpdateGraph(this.zgcGraph);
}
}
