public static ParserFormatList ReadFromOptionFile(string sectionName)
{
string optionFile = AppDomain.CurrentDomain.BaseDirectory + "/MiscOptions.xml";
if (File.Exists(optionFile))
{
var result = new ParserFormatList();
result.ReadFromFile(optionFile, sectionName);
result.Sort((p1, p2) => p1.GUInameIndex - p2.GUInameIndex);
return(result);
}
else
{
bool designMode = (LicenseManager.UsageMode == LicenseUsageMode.Designtime);
if (!designMode)
{
Console.Error.WriteLine(string.Format("Cannot find option file {0}", optionFile));
throw new Exception(string.Format("Cannot find option file {0}", optionFile));
}
else
{
return(new ParserFormatList());
}
}
}
public void TestReadFromFile()
{
Console.WriteLine(Application.ExecutablePath);
var list = new ParserFormatList();
list.ReadFromFile(optionFile, "DatabaseParseDefinitions");
Assert.AreEqual(4, list.Count);
Assert.AreEqual("IPI", list[0].FormatName);
Assert.AreEqual("33001", list[0].FormatId);
Assert.AreEqual("IPI:IPI00022229.1|SWISS-PROT:P04114|...", list[0].Sample);
Assert.AreEqual(1, list[0].Count);
Assert.AreEqual("accessNumber", list[0][0].ItemName);
Assert.AreEqual(@"(IPI\d+)", list[0][0].RegularExpression);
Assert.AreEqual(1.0, list[0][0].Slope);
Assert.AreEqual(0.0, list[0][0].Offset);
}
public static ParserFormatList ReadFromOptionFile(string sectionName)
{
var executeDir = FileUtils.GetAssemblyPath();
if (Directory.Exists(executeDir))
{
string optionFile = executeDir + "\\MiscOptions.xml";
if (File.Exists(optionFile))
{
var result = new ParserFormatList();
result.ReadFromFile(optionFile, sectionName);
result.Sort((p1, p2) => p1.GUInameIndex - p2.GUInameIndex);
return(result);
}
}
return(null);
}
