/** Tests the construction of a feature list */
public void TestConstructor () {
Sequence seq = new Sequence( AlphabetType.DNA, "acgt" );
FeatureList featureList = new FeatureList( "Test" );
seq.AddFeatures( featureList );
Assert.AreEqual( 1, seq.FeatureLists.Count );
Assert.AreEqual( "Test", featureList.Name );
// Assert.AreEqual(seq, featureList.GetSequence());
}
public void TestGetFeatureSequence()
{
Sequence seq = new Sequence(AlphabetType.DNA, "acgta");
FeatureList featureList = new FeatureList("test");
Feature feature = new Feature("feature1", 2, 4, +1);
featureList.Add(feature);
seq.AddFeatures(featureList);
Assert.AreEqual("cgt", feature.Letters());
}
/** Tests the adding of features */
public void TestAdd () {
Sequence seq = new Sequence( AlphabetType.DNA, "acgt" );
FeatureList featureList = new FeatureList( "Test" );
seq.AddFeatures( featureList );
Feature feature1 = new Feature( "Test1", 1, 3, +1 );
Feature feature2 = new Feature( "Test2", 1, 3, +1 );
featureList.Add( feature1, false );
featureList.Add( feature2, true );
Assert.AreEqual( 2, featureList.Count );
Assert.AreEqual( null, feature1.BaseSequence );
Assert.AreEqual( seq, feature2.BaseSequence );
}
public void TestAddGetFeature () {
Sequence seq = new Sequence( AlphabetType.DNA, "ACTG" );
FeatureList flist1 = new FeatureList( "test1" );
FeatureList flist2 = new FeatureList( "test2" );
Assert.AreEqual( 0, seq.FeatureLists.Count );
seq.AddFeatures( flist1 );
seq.AddFeatures( flist2 );
Assert.AreEqual( 2, seq.FeatureLists.Count );
Assert.AreEqual( flist1, seq.FeatureLists[ 0 ] );
Assert.AreEqual( flist1, seq.FeatureLists[ "test1" ] );
Assert.AreEqual( flist2, seq.FeatureLists[ 1 ] );
Assert.AreEqual( flist2, seq.FeatureLists[ "test2" ] );
}
public void TestHasFeatures () {
Sequence seq = new Sequence( AlphabetType.DNA, "ACTG" );
Assert.AreEqual( false, seq.HasFeatures() );
seq.AddFeatures( new FeatureList( "test1" ) );
Assert.AreEqual( true, seq.HasFeatures() );
}
public void TestAddFeatureLists () {
Sequence seq = new Sequence( AlphabetType.DNA, "ACTG" );
FeatureList flist1 = new FeatureList( "test1" );
FeatureList flist2 = new FeatureList( "test2" );
AnnotatedList<FeatureList> flists = new AnnotatedList<FeatureList>();
flists.Add( flist1 );
flists.Add( flist2 );
seq.AddFeatures( flists );
Assert.AreEqual( 2, seq.FeatureLists.Count );
}