public List<SequenceContract> ParseFastaFile(string fastaContent)
{
StringReader sr = new StringReader(fastaContent);
List<SequenceContract> sequences = new List<SequenceContract>();
SequenceList bioSeqList = null;
using (ReaderBase reader = new BioFastaReader())
{
bioSeqList = reader.Read(sr);
}
foreach (Sequence seq in bioSeqList)
sequences.Add
(new SequenceContract()
{
Name = seq.Annotations("SequenceName").AnnotationValue as string,
AlphabetName = seq.Alphabet.Name,
Characters = seq.Letters()
}
);
return sequences;
}
public void LoadFasta (
FileInfo file
) {
foreach ( var wrapper in sequences ) {
if ( file.ToString().Equals( wrapper.FileInfo.ToString() ) ) return;
}
using ( Stream stream = file.OpenRead() ) {
string content = string.Empty;
using ( StreamReader streamReader = new StreamReader( stream ) ) {
BioFastaReader reader = new BioFastaReader();
ReadSequences( file, streamReader, reader );
}
}
}