public ModificationPanel(Mod[] value, CVLookUp cv)
{
_count = value.Length;
_type = value.Length > 0 && value.First() != null ? value.First().Element : MetadataElement.FIXED_MOD;
_cv = cv;
InitializeComponent();
Value = value;
}
protected internal IndexedElement(MetadataElement element, int id)
{
if (element == null){
throw new ArgumentNullException("element");
}
if (id <= 0){
throw new IndexOutOfRangeException("id value should great than 0!");
}
this.element = element;
this.id = id;
}
/**
* subElementName should include elementName.
* For example: assay_quantification_mod
*/
public static MetadataSubElement FindSubElement(MetadataElement element, string subElementName)
{
if (element == null || subElementName == null){
return null;
}
MetadataSubElement subElement;
try{
subElement =
All.First(
x =>
x.Element.Name.Equals(element.Name, StringComparison.CurrentCultureIgnoreCase) &&
x.SubName.Equals(subElementName, StringComparison.CurrentCultureIgnoreCase));
}
catch (ArgumentNullException){
subElement = null;
}
catch (InvalidOperationException){
subElement = null;
}
return subElement;
}
public static List<IndexedElement> ParseIndexedElementList(string target, MetadataElement element)
{
SplitList<string> list = ParseStringList(MZTabConstants.COMMA, target);
List<IndexedElement> indexedElementList = new List<IndexedElement>();
foreach (string item in list){
IndexedElement indexedElement = ParseIndexedElement(item, element);
if (indexedElement == null){
indexedElementList.Clear();
return indexedElementList;
}
indexedElementList.Add(indexedElement);
}
return indexedElementList;
}
public static IndexedElement ParseIndexedElement(string target, MetadataElement element)
{
target = ParseString(target);
if (target == null){
return null;
}
Regex regex = new Regex(element + "\\[(\\d+)\\]");
if (regex.IsMatch(target)){
int id = int.Parse(regex.Match(target).Groups[1].Value);
return new IndexedElement(element, id);
}
return null;
}
public Mod(MetadataElement element, int id)
: base(element, id)
{
}
private MetadataSubElement(MetadataElement element, string subName)
{
_element = element;
_subName = subName;
}
/**
* element.getName_propertyName.
* @see uk.ac.ebi.pride.jmztab.model.MetadataElement#getName()
*/
public static MetadataProperty FindProperty(MetadataElement element, string propertyName)
{
if (element == null || propertyName == null){
return null;
}
MetadataProperty property;
try{
property =
All.First(
x =>
x.Element.Name.Equals(element.Name, StringComparison.CurrentCultureIgnoreCase) &&
x.Name.Equals(propertyName, StringComparison.CurrentCultureIgnoreCase));
}
catch (ArgumentNullException){
property = null;
}
catch (InvalidOperationException){
property = null;
}
return property;
}
private MetadataProperty(MetadataSubElement subElement, string name)
{
_element = subElement.Element;
_subElement = subElement;
_name = name;
}
private MetadataProperty(MetadataElement element, string name)
{
_element = element;
_subElement = null;
_name = name;
}
private MetadataProperty checkProperty(MetadataElement element, string propertyName)
{
if (string.IsNullOrEmpty(propertyName)){
return null;
}
MetadataProperty property = MetadataProperty.FindProperty(element, propertyName);
if (property == null){
MZTabError error = new MZTabError(FormatErrorType.MTDDefineLabel, _lineNumber,
element.Name + "-" + propertyName);
throw new MZTabException(error);
}
return property;
}
private List<IndexedElement> checkIndexedElementList(string defineLabel, string valueLabel,
MetadataElement element)
{
List<IndexedElement> indexedElementList = MZTabUtils.ParseIndexedElementList(valueLabel, element);
if (indexedElementList == null || indexedElementList.Count == 0){
MZTabError error = new MZTabError(FormatErrorType.IndexedElement, _lineNumber,
Error_Header + defineLabel, valueLabel);
throw new MZTabException(error);
}
return indexedElementList;
}
public bool Match(MetadataElement element)
{
return element.Name.Equals(Name);
}
