/// <summary>
/// Initialise all metric output files, if required and if not already initialised
/// </summary>
private void InitMetricOutputFiles()
{
if (writeClusterMetricOriginal && formatterOriginalFile == null)
{
formatterOriginalFile = new MetricFormatter(fileName + "\\orig.metr");
}
if (writeClusterMetricFiltered && formatterFilteredFile == null)
{
formatterFilteredFile = new MetricFormatter(fileName + "\\filtered.metr");
}
}
/// <summary>
/// Dispose resources.
/// </summary>
/// <param name="includeManagedResources">Boolean value indicates whether managed resources should also be disposed.</param>
protected virtual void Dispose(bool includeManagedResources)
{
if(includeManagedResources){
if (formatterOriginalFile != null)
{
formatterOriginalFile.Close();
formatterOriginalFile = null;
}
if (formatterFilteredFile != null)
{
formatterFilteredFile.Close();
formatterFilteredFile = null;
}
if (bamStream != null)
{
bamStream.Close();
bamStream = null;
}
if (genotypesStream != null)
{
genotypesStream.Close();
genotypesStream = null;
}
if (haplotypesStream != null)
{
haplotypesStream.Close();
haplotypesStream = null;
}
}
}
private void DeleteFilteredMetricFile()
{
formatterFilteredFile.Close();
formatterFilteredFile = null;
File.Delete(fileName + "\\filtered.metr");
File.Delete(fileName + "\\filtered.bam");
}
