protected Quantity() { Persistable = true; QuantityType = QuantityType.Undefined; Dimension = Constants.Dimension.NO_DIMENSION; NegativeValuesAllowed = false; ValueOrigin = new ValueOrigin(); }
public void should_return_a_combination_of_type_and_descriptiion_if_those_properties_are_set() { var display = new ValueOrigin { Source = ValueOriginSources.Internet, Description = "Hello" }.Display; display.Contains("Hello").ShouldBeTrue(); display.Contains(ValueOriginSources.Internet.Display).ShouldBeTrue(); }
protected override void Context() { base.Context(); _sourceValueOrigin = new ValueOrigin(); _targetValueOrigin = new ValueOrigin(); _sourceValueOrigin.Source = ValueOriginSources.Database; _sourceValueOrigin.Method = ValueOriginDeterminationMethods.InVitro; _sourceValueOrigin.Description = "Hello"; }
protected override void Context() { base.Context(); _valueOrigin1 = new ValueOrigin(); _valueOrigin2 = new ValueOrigin(); _valueOrigin1.Description = "Hello"; _valueOrigin1.Source = ValueOriginSources.Database; _valueOrigin1.Method = ValueOriginDeterminationMethods.InVitro; _valueOrigin2.UpdateFrom(_valueOrigin1); }
protected override void Context() { base.Context(); _sourceValueOrigin = new ValueOrigin { Id = 10, Description = "New description", Source = ValueOriginSources.Database, Method = ValueOriginDeterminationMethods.ManualFit, }; }
public TimeParameter() { Tags = new Tags { new Tag(Constants.TIME) }; Info = new ParameterInfo(); Origin = new ParameterOrigin(); ValueOrigin = new ValueOrigin(); CanBeVaried = false; CanBeVariedInPopulation = false; NegativeValuesAllowed = true; }
protected override Task Context() { _parameterMapper = A.Fake <ParameterMapper>(); _alternativeMapper = A.Fake <AlternativeMapper>(); _calculationMethodCacheMapper = A.Fake <CalculationMethodCacheMapper>(); _processMapper = A.Fake <CompoundProcessMapper>(); _compoundFactory = A.Fake <ICompoundFactory>(); _valueOriginMapper = A.Fake <ValueOriginMapper>(); sut = new CompoundMapper(_parameterMapper, _alternativeMapper, _calculationMethodCacheMapper, _processMapper, _valueOriginMapper, _compoundFactory); _compound = new Model.Compound { Name = "Compound", Description = "Description" }; _pkaValueOrigin = new ValueOrigin { Method = ValueOriginDeterminationMethods.InVitro, Description = "PKA" }; _snapshotValueOrigin = new Snapshots.ValueOrigin { Method = ValueOriginDeterminationMethodId.InVivo, Description = "PKA" }; addPkAParameters(_compound, 0, 8, CompoundType.Base); addPkAParameters(_compound, 1, 4, CompoundType.Acid); addPkAParameters(_compound, 2, 7, CompoundType.Neutral); _compoundIntestinalPermeabilityAlternativeGroup = createParameterAlternativeGroup(CoreConstants.Groups.COMPOUND_INTESTINAL_PERMEABILITY); _compound.AddParameterAlternativeGroup(createParameterAlternativeGroup(CoreConstants.Groups.COMPOUND_LIPOPHILICITY)); _compound.AddParameterAlternativeGroup(createParameterAlternativeGroup(CoreConstants.Groups.COMPOUND_FRACTION_UNBOUND)); _compound.AddParameterAlternativeGroup(createParameterAlternativeGroup(CoreConstants.Groups.COMPOUND_SOLUBILITY)); _compound.AddParameterAlternativeGroup(createParameterAlternativeGroup(CoreConstants.Groups.COMPOUND_PERMEABILITY)); _compound.AddParameterAlternativeGroup(_compoundIntestinalPermeabilityAlternativeGroup); _compoundIntestinalPermeabilityAlternativeGroup.DefaultAlternative.IsDefault = true; //Calculated alternative will not be the default alternative for intestinal perm _calculatedAlternative = new ParameterAlternative { Name = PKSimConstants.UI.CalculatedAlernative, IsDefault = false }; _compoundIntestinalPermeabilityAlternativeGroup.AddAlternative(_calculatedAlternative); //Mapping of a calculated alternative returns null A.CallTo(() => _alternativeMapper.MapToSnapshot(_calculatedAlternative)).Returns(Task.FromResult <Alternative>(null)); _compound.Add(DomainHelperForSpecs.ConstantParameterWithValue(1).WithName(CoreConstants.Parameters.IS_SMALL_MOLECULE)); _compound.Add(DomainHelperForSpecs.ConstantParameterWithValue((int)PlasmaProteinBindingPartner.Glycoprotein).WithName(CoreConstants.Parameters.PLASMA_PROTEIN_BINDING_PARTNER)); _partialProcess = new EnzymaticProcess().WithName("EnzymaticProcess"); _systemicProcess = new SystemicProcess().WithName("SystemicProcess"); _compound.AddProcess(_partialProcess); _compound.AddProcess(_systemicProcess); _calculationMethodCacheSnapshot = new CalculationMethodCache(); A.CallTo(() => _calculationMethodCacheMapper.MapToSnapshot(_compound.CalculationMethodCache)).Returns(_calculationMethodCacheSnapshot); _snapshotProcess1 = new CompoundProcess(); _snapshotProcess2 = new CompoundProcess(); A.CallTo(() => _processMapper.MapToSnapshot(_partialProcess)).Returns(_snapshotProcess1); A.CallTo(() => _processMapper.MapToSnapshot(_systemicProcess)).Returns(_snapshotProcess2); _molweightParameter = DomainHelperForSpecs.ConstantParameterWithValue(400).WithName(Constants.Parameters.MOL_WEIGHT); _molweightParameter.ValueOrigin.Method = ValueOriginDeterminationMethods.InVivo; //Do not update F value origin to ensure that it's being synchronized when mapping from snapshot _halogenFParameter = DomainHelperForSpecs.ConstantParameterWithValue(5).WithName(Constants.Parameters.F); _compound.Add(_molweightParameter); _compound.Add(_halogenFParameter); return(_completed); }
protected override void Because() { _unknownValueOrigin = ValueOrigin.Unknown; }
public void shoud_return_true_if_they_are_both_undefined() { _sourceValueOrigin = new ValueOrigin(); _sourceValueOrigin.Equals(_targetValueOrigin).ShouldBeTrue(); }
protected override void Because() { _clone = sut.Clone(); }
public void should_return_equal_if_they_are_both_undefined() { _valueOrigin1 = new ValueOrigin(); _valueOrigin2 = new ValueOrigin(); _valueOrigin1.ShouldBeEqualTo(_valueOrigin2); }
public void should_return_comparable_if_they_are_both_undefined() { _valueOrigin1 = new ValueOrigin(); _valueOrigin2 = new ValueOrigin(); _valueOrigin1.CompareTo(_valueOrigin2).ShouldBeEqualTo(0); }