/// <summary>
/// Deserializes from text file to DistalDendrite
/// </summary>
/// <param name="sr"></param>
/// <returns>DistalDendrite</returns>
public Synapse DeserializeSynapse(StreamReader sr)
{
while (sr.Peek() >= 0)
{
string data = sr.ReadLine();
if (data == ReadBegin(nameof(Synapse)))
{
Synapse synapseT1 = Synapse.Deserialize(sr);
Cell cell1 = synapseT1.SourceCell;
DistalDendrite distSegment1 = synapseT1.SourceCell.DistalDendrites[0];
DistalDendrite distSegment2 = synapseT1.SourceCell.DistalDendrites[1];
distSegment1.ParentCell = cell1;
distSegment2.ParentCell = cell1;
synapseT1.SourceCell = cell1;
return(synapseT1);
}
}
return(null);
}
public static Pool Deserialize(StreamReader sr)
{
Pool pool = new Pool();
HtmSerializer2 ser = new HtmSerializer2();
while (sr.Peek() >= 0)
{
string data = sr.ReadLine();
if (data == String.Empty || data == ser.ReadBegin(nameof(Pool)) || (data.ToCharArray()[0] == HtmSerializer2.ElementsDelimiter && data.ToCharArray()[1] == HtmSerializer2.ParameterDelimiter))
{
continue;
}
else if (data == ser.ReadEnd(nameof(Pool)))
{
break;
}
else if (data.Contains(HtmSerializer2.KeyValueDelimiter))
{
int val = ser.ReadKeyISValue(data);
data = sr.ReadLine();
pool.m_SynapsesBySourceIndex.Add(val, Synapse.Deserialize(sr));
}
else
{
string[] str = data.Split(HtmSerializer2.ParameterDelimiter);
for (int i = 0; i < str.Length; i++)
{
switch (i)
{
case 0:
{
pool.size = ser.ReadIntValue(str[i]);
break;
}
case 1:
{
pool.NumInputs = ser.ReadIntValue(str[i]);
break;
}
case 2:
{
pool.m_SynapseConnections = ser.ReadListInt(str[i]);
break;
}
default:
{ break; }
}
}
}
}
return(pool);
}
public static ProximalDendrite Deserialize(StreamReader sr)
{
ProximalDendrite proximal = new ProximalDendrite();
HtmSerializer2 ser = new HtmSerializer2();
while (sr.Peek() >= 0)
{
string data = sr.ReadLine();
if (data == String.Empty || data == ser.ReadBegin(nameof(ProximalDendrite)) || (data.ToCharArray()[0] == HtmSerializer2.ElementsDelimiter && data.ToCharArray()[1] == HtmSerializer2.ParameterDelimiter) || data.ToCharArray()[1] == HtmSerializer2.ParameterDelimiter)
{
continue;
}
else if (data == ser.ReadBegin(nameof(Pool)))
{
proximal.RFPool = Pool.Deserialize(sr);
}
//else if (data == ser.ReadBegin(nameof(Integer)))
//{
// proximal.boxedIndex = Integer.Deserialize(sr);
//}
else if (data == ser.ReadBegin(nameof(Synapse)))
{
proximal.Synapses.Add(Synapse.Deserialize(sr));
}
else if (data == ser.ReadEnd(nameof(ProximalDendrite)))
{
break;
}
else
{
string[] str = data.Split(HtmSerializer2.ParameterDelimiter);
for (int i = 0; i < str.Length; i++)
{
switch (i)
{
case 0:
{
proximal.SegmentIndex = ser.ReadIntValue(str[i]);
break;
}
case 1:
{
proximal.SynapsePermConnected = ser.ReadDoubleValue(str[i]);
break;
}
case 2:
{
proximal.NumInputs = ser.ReadIntValue(str[i]);
break;
}
default:
{ break; }
}
}
}
}
return(proximal);
}
/// <summary>
/// Deserializes the cell from the stream.
/// </summary>
/// <param name="sr"></param>
/// <returns></returns>
public static Cell Deserialize(StreamReader sr)
{
Cell cell = new Cell();
HtmSerializer2 ser = new HtmSerializer2();
while (sr.Peek() >= 0)
{
string data = sr.ReadLine();
if (data == String.Empty || data == ser.ReadBegin(nameof(Cell)))
{
continue;
}
else if (data == ser.ReadEnd(nameof(Cell)))
{
break;
}
else
{
string[] str = data.Split(HtmSerializer2.ParameterDelimiter);
for (int i = 0; i < str.Length; i++)
{
switch (i)
{
case 0:
{
cell.Index = ser.ReadIntValue(str[i]);
break;
}
case 1:
{
cell.CellId = ser.ReadIntValue(str[i]);
break;
}
case 2:
{
cell.ParentColumnIndex = ser.ReadIntValue(str[i]);
break;
}
case 3:
{
int[] vs = ser.ReadArrayInt(str[i]);
cell.DistalDendrites = new List <DistalDendrite>();
for (int j = 0; j < vs.Count(); j++)
{
cell.DistalDendrites.Add(new DistalDendrite());
cell.DistalDendrites[j].Ordinal = vs[j];
using (StreamReader swLD = new StreamReader($"ser_SerializeDistalDendrite_{cell.DistalDendrites[j].Ordinal}.txt"))
{
cell.DistalDendrites[j] = DistalDendrite.Deserialize(swLD);
}
}
break;
}
case 4:
{
int[] vs = ser.ReadArrayInt(str[i]);
cell.ReceptorSynapses = new List <Synapse>();
for (int j = 0; j < vs.Count(); j++)
{
cell.ReceptorSynapses.Add(new Synapse());
cell.ReceptorSynapses[j].SynapseIndex = vs[j];
using (StreamReader swLS = new StreamReader($"ser_SerializeSynapseTest_{cell.ReceptorSynapses[j].SynapseIndex}.txt"))
{
cell.ReceptorSynapses[j] = Synapse.Deserialize(swLS);
}
}
break;
}
default:
{ break; }
}
}
}
}
return(cell);
}