private void readPBD(string filePath)
{
using (var sr = new StreamReader(filePath, Encoding.Default))
{
patientBasedDataWithEvents = new List<PatientBasedDataWithEvent>();
string[] titles = sr.ReadLine().Split('\t');
initializeEventIndex(titles);
int index_ID = Array.IndexOf(titles, "ID");
int index_Birthday = Array.IndexOf(titles, "Birthday");
int index_Gender = Array.IndexOf(titles, "Gender");
while (!sr.EndOfStream)
{
string[] splitline = sr.ReadLine().Split('\t');
PatientBasedDataWithEvent toAdd = new PatientBasedDataWithEvent()
{
ID = splitline[index_ID],
Birthday = splitline[index_Birthday],
gender = splitline[index_Gender] == "F" ? Gender.Female : Gender.Male
};
foreach (var i in EventIndex)
{
double age = -1;
if (splitline[i] != "")
{
age = Convert.ToDouble(splitline[i]);
}
toAdd.eventAges.Add(age);
}
patientBasedDataWithEvents.Add(toAdd);
}
}
}
private void readSID(string filePath)
{
using (var sr = new StreamReader(filePath, Encoding.Default))
{
string[] titles = sr.ReadLine().Split('\t');
int index_ID = Array.IndexOf(titles, "ID");
int index_Birthday = Array.IndexOf(titles, "Birthday");
int index_Gender = Array.IndexOf(titles, "Gender");
int index_firstInDate = Array.IndexOf(titles, "firstInDate");
int index_lastOutDate = Array.IndexOf(titles, "lastOutDate");
while (!sr.EndOfStream)
{
string[] splitline = sr.ReadLine().Split('\t');
string ID = splitline[index_ID];
string Birthday = splitline[index_Birthday];
var IDtoCompare = new IDData() { ID = ID, Birthday = Birthday };
if (IDCriteraiEnable && IDCriteria.BinarySearch(IDtoCompare) < 0) //ID criteria
{
continue;
}
Gender gender = splitline[index_Gender] == "F" ? Gender.Female : Gender.Male;
string firstInDate = splitline[index_firstInDate];
string lastOutDate = splitline[index_lastOutDate];
double firstInAge = firstInDate.StringToDate().Subtract(Birthday.StringToDate()).TotalDays / 365.25;
if (firstInAge < 0)
{
firstInAge = 0;
}
if (firstInAge > 99)
{
firstInAge = 99;
}
double lastOutAge = lastOutDate.StringToDate().Subtract(Birthday.StringToDate()).TotalDays / 365.25;
if (lastOutAge < 0 || lastOutDate.StringToDate() > dataEndDate)
{
lastOutAge = dataEndDate.Subtract(Birthday.StringToDate()).TotalDays / 365.25;
}
var toCompare = new PatientBasedDataWithEvent() { ID = ID, Birthday = Birthday };
int index = patientBasedDataWithEvents.BinarySearch(toCompare);
if (index < 0)
{
for (int i = 0; i < ASITables.Count(); i++)
{
ASITables[i].addPatientYear(gender, firstInAge, lastOutAge);
}
}
else if (index >= 0)
{
lastOutAge = dataEndDate.Subtract(Birthday.StringToDate()).TotalDays / 365.25;
for (int i = 0; i < ASITables.Count(); i++)
{
double currentEventAge = patientBasedDataWithEvents[index].eventAges[i];
if (currentEventAge >= 0)
{
ASITables[i].addPatientYear(gender, firstInAge, currentEventAge);
ASITables[i].addEvent(gender, currentEventAge);
}
else
{
ASITables[i].addPatientYear(gender, firstInAge, lastOutAge);
}
}
}
}
}
}