コード例 #1
0
 private void readPBD(string filePath)
 {
     using (var sr = new StreamReader(filePath, Encoding.Default))
     {
         patientBasedDataWithEvents = new List<PatientBasedDataWithEvent>();
         string[] titles = sr.ReadLine().Split('\t');
         initializeEventIndex(titles);
         int index_ID = Array.IndexOf(titles, "ID");
         int index_Birthday = Array.IndexOf(titles, "Birthday");
         int index_Gender = Array.IndexOf(titles, "Gender");
         while (!sr.EndOfStream)
         {
             string[] splitline = sr.ReadLine().Split('\t');
             PatientBasedDataWithEvent toAdd = new PatientBasedDataWithEvent()
             {
                 ID = splitline[index_ID],
                 Birthday = splitline[index_Birthday],
                 gender = splitline[index_Gender] == "F" ? Gender.Female : Gender.Male
             };
             foreach (var i in EventIndex)
             {
                 double age = -1;
                 if (splitline[i] != "")
                 {
                     age = Convert.ToDouble(splitline[i]);
                 }
                 toAdd.eventAges.Add(age);
             }
             patientBasedDataWithEvents.Add(toAdd);
         }
     }
 }
コード例 #2
0
        private void readSID(string filePath)
        {
            using (var sr = new StreamReader(filePath, Encoding.Default))
            {
                string[] titles = sr.ReadLine().Split('\t');
                int index_ID = Array.IndexOf(titles, "ID");
                int index_Birthday = Array.IndexOf(titles, "Birthday");
                int index_Gender = Array.IndexOf(titles, "Gender");
                int index_firstInDate = Array.IndexOf(titles, "firstInDate");
                int index_lastOutDate = Array.IndexOf(titles, "lastOutDate");
                while (!sr.EndOfStream)
                {
                    string[] splitline = sr.ReadLine().Split('\t');
                    string ID = splitline[index_ID];
                    string Birthday = splitline[index_Birthday];
                    var IDtoCompare = new IDData() { ID = ID, Birthday = Birthday };
                    if (IDCriteraiEnable && IDCriteria.BinarySearch(IDtoCompare) < 0)  //ID criteria
                    {
                        continue;
                    }
                    Gender gender = splitline[index_Gender] == "F" ? Gender.Female : Gender.Male;
                    string firstInDate = splitline[index_firstInDate];
                    string lastOutDate = splitline[index_lastOutDate];
                    double firstInAge = firstInDate.StringToDate().Subtract(Birthday.StringToDate()).TotalDays / 365.25;
                    if (firstInAge < 0)
                    {
                        firstInAge = 0;
                    }
                    if (firstInAge > 99)
                    {
                        firstInAge = 99;
                    }
                    double lastOutAge = lastOutDate.StringToDate().Subtract(Birthday.StringToDate()).TotalDays / 365.25;
                    if (lastOutAge < 0 || lastOutDate.StringToDate() > dataEndDate)
                    {
                        lastOutAge = dataEndDate.Subtract(Birthday.StringToDate()).TotalDays / 365.25;
                    }
                    var toCompare = new PatientBasedDataWithEvent() { ID = ID, Birthday = Birthday };
                    int index = patientBasedDataWithEvents.BinarySearch(toCompare);
                    if (index < 0)
                    {
                        for (int i = 0; i < ASITables.Count(); i++)
                        {
                            ASITables[i].addPatientYear(gender, firstInAge, lastOutAge);
                        }
                    }
                    else if (index >= 0)
                    {
                        lastOutAge = dataEndDate.Subtract(Birthday.StringToDate()).TotalDays / 365.25;
                        for (int i = 0; i < ASITables.Count(); i++)
                        {
                            double currentEventAge = patientBasedDataWithEvents[index].eventAges[i];
                            if (currentEventAge >= 0)
                            {
                                ASITables[i].addPatientYear(gender, firstInAge, currentEventAge);
                                ASITables[i].addEvent(gender, currentEventAge);
                            }
                            else
                            {
                                ASITables[i].addPatientYear(gender, firstInAge, lastOutAge);
                            }
                        }
                    }

                }
            }
        }