/// <summary>
/// Create a perturbed hash generator using the provided seed generator to
/// initialise atom invariants and using the provided stereo factory.
/// </summary>
/// <param name="seeds"></param>
/// <param name="simple">generator to encode the initial values of atoms</param>
/// <param name="pseudorandom">pseudorandom number generator used to randomise hash distribution</param>
/// <param name="factory">a stereo encoder factory</param>
/// <param name="finder">equivalent set finder for driving the systematic perturbation</param>
/// <param name="suppression">suppression of atoms (these atoms are 'ignored' in the hash generation)</param>
/// <exception cref="ArgumentException">depth was less then 0</exception>
/// <exception cref="ArgumentNullException"> seed generator or pseudo random was null</exception>
/// <seealso cref="SeedGenerator"/>
public PerturbedAtomHashGenerator(SeedGenerator seeds, AbstractAtomHashGenerator simple, Pseudorandom pseudorandom,
IStereoEncoderFactory factory, EquivalentSetFinder finder, AtomSuppression suppression)
: base(pseudorandom)
{
this.finder = finder;
this.factory = factory;
this.simple = simple ?? throw new ArgumentNullException(nameof(simple), "no simple generator provided");
this.seeds = seeds ?? throw new ArgumentNullException(nameof(seeds), "no seed generator provided");
this.suppression = suppression ?? throw new ArgumentNullException(nameof(suppression), "no suppression provided, use AtomSuppression.None()");
}
/// <summary>
/// Given the current configuration create an <see cref="IAtomHashGenerator"/>.
/// </summary>
/// <returns>instance of the generator</returns>
/// <exception cref="ArgumentException">no depth or encoders were configured</exception>
public IAtomHashGenerator Atomic()
{
if (depth < 0)
{
throw new ArgumentException("no depth specified, use .Depth(int)");
}
List <IAtomEncoder> encoders = new List <IAtomEncoder>();
// set is ordered
encoders.AddRange(encoderSet);
encoders.AddRange(this.customEncoders);
// check if suppression of atoms is wanted - if not use a default value
// we also use the 'Basic' generator (see below)
bool suppress = suppression != AtomSuppression.Unsuppressed;
IAtomEncoder encoder = new ConjugatedAtomEncoder(encoders);
SeedGenerator seeds = new SeedGenerator(encoder, suppression);
AbstractAtomHashGenerator simple = suppress ? (AbstractAtomHashGenerator) new SuppressedAtomHashGenerator(seeds, new Xorshift(),
MakeStereoEncoderFactory(), suppression, depth) : (AbstractAtomHashGenerator) new BasicAtomHashGenerator(seeds, new Xorshift(),
MakeStereoEncoderFactory(), depth);
// if there is a finder for checking equivalent vertices then the user
// wants to 'perturb' the hashed
if (equivSetFinder != null)
{
return(new PerturbedAtomHashGenerator(seeds, simple, new Xorshift(), MakeStereoEncoderFactory(),
equivSetFinder, suppression));
}
else
{
// no equivalence set finder - just use the simple hash
return(simple);
}
}