/// <summary>
/// Changes initial Root Wt to an array.
/// </summary>
/// <param name="root">The root JSON token.</param>
/// <param name="fileName">The name of the apsimx file.</param>
private static void UpgradeToVersion99(JObject root, string fileName)
{
// Delete all alias children.
foreach (var soilNitrogen in JsonUtilities.ChildrenOfType(root, "SoilNitrogen"))
{
var parent = JsonUtilities.Parent(soilNitrogen);
var nutrient = JsonUtilities.CreateNewChildModel(parent, "Nutrient", "Models.Soils.Nutrients.Nutrient");
nutrient["ResourceName"] = "Nutrient";
soilNitrogen.Remove();
}
foreach (var manager in JsonUtilities.ChildManagers(root))
{
manager.Replace("using Models.Soils;", "using Models.Soils;\r\nusing Models.Soils.Nutrients;");
manager.Replace("SoilNitrogen.FOMN", ".Nutrient.FOMN");
manager.Replace("SoilNitrogen.FOMC", ".Nutrient.FOMC");
if (manager.Replace("Soil.SoilNitrogen.HumicN", "Humic.N"))
{
manager.AddDeclaration("NutrientPool", "Humic", new string[] { "[ScopedLinkByName]" });
}
if (manager.Replace("Soil.SoilNitrogen.HumicC", "Humic.C"))
{
manager.AddDeclaration("NutrientPool", "Humic", new string[] { "[ScopedLinkByName]" });
}
if (manager.Replace("Soil.SoilNitrogen.MicrobialN", "Microbial.N"))
{
manager.AddDeclaration("NutrientPool", "Microbial", new string[] { "[ScopedLinkByName]" });
}
if (manager.Replace("Soil.SoilNitrogen.MicrobialC", "Microbial.C"))
{
manager.AddDeclaration("NutrientPool", "Microbial", new string[] { "[ScopedLinkByName]" });
}
if (manager.Replace("Soil.SoilNitrogen.dlt_n_min_res", "SurfaceResidueDecomposition.MineralisedN"))
{
manager.AddDeclaration("CarbonFlow", "SurfaceResidueDecomposition", new string[] { "[LinkByPath(Path=\"[Nutrient].SurfaceResidue.Decomposition\")]" });
}
manager.Replace("SoilNitrogen.MineralisedN", "Nutrient.MineralisedN");
manager.Replace("SoilNitrogen.TotalN", "Nutrient.TotalN");
if (manager.Replace("SoilNitrogen.TotalN", "Nutrient.TotalN"))
{
manager.RemoveDeclaration("SoilNitrogen");
manager.AddDeclaration("INutrient", "Nutrient", new string[] { "[ScopedLinkByName]" });
}
manager.Replace("SoilNitrogen.TotalC", "Nutrient.TotalC");
if (manager.Replace("SoilNitrogen.TotalC", "Nutrient.TotalC"))
{
manager.RemoveDeclaration("SoilNitrogen");
manager.AddDeclaration("INutrient", "Nutrient", new string[] { "[ScopedLinkByName]" });
}
manager.Replace("SoilNitrogen.mineral_n", "Nutrient.MineralN");
manager.Replace("SoilNitrogen.Denitrification", "Nutrient.Natm");
manager.Replace("SoilNitrogen.n2o_atm", "Nutrient.N2Oatm");
manager.Save();
}
foreach (var report in JsonUtilities.ChildrenOfType(root, "Report"))
{
JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.NO3.kgha", "Nutrient.NO3.kgha");
JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.NH4.kgha", "Nutrient.NH4.kgha");
JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.Urea.kgha", "Nutrient.Urea.kgha");
JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.PlantAvailableNO3.kgha", "Nutrient.PlantAvailableNO3.kgha");
JsonUtilities.SearchReplaceReportVariableNames(report, "SoilNitrogen.PlantAvailableNH4.kgha", "Nutrient.PlantAvailableNH4.kgha");
JsonUtilities.SearchReplaceReportVariableNames(report, "[SoilNitrogen].NO3.kgha", "[Nutrient].NO3.kgha");
JsonUtilities.SearchReplaceReportVariableNames(report, "[SoilNitrogen].NH4.kgha", "[Nutrient].NH4.kgha");
JsonUtilities.SearchReplaceReportVariableNames(report, "[SoilNitrogen].Urea.kgha", "[Nutrient].Urea.kgha");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.FOMN", ".Nutrient.FOMN");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.FOMC", ".Nutrient.FOMC");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.HumicN", ".Nutrient.Humic.N");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.HumicC", ".Nutrient.Humic.C");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.MicrobialN", ".Nutrient.Microbial.N");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.MicrobialC", ".Nutrient.Microbial.C");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.urea", ".Nutrient.Urea.kgha");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.dlt_n_min_res", ".Nutrient.SurfaceResidue.Decomposition.MineralisedN");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.MineralisedN", ".Nutrient.MineralisedN");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.Denitrification", ".Nutrient.Natm");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.n2o_atm", ".Nutrient.N2Oatm");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.TotalC", ".Nutrient.TotalC");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.TotalN", ".Nutrient.TotalN");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.mineral_n", ".Nutrient.MineralN");
JsonUtilities.SearchReplaceReportVariableNames(report, ".SoilNitrogen.Nitrification", ".Nutrient.NH4.Nitrification");
}
foreach (var series in JsonUtilities.ChildrenOfType(root, "Series"))
{
if (series["XFieldName"] != null)
{
series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.NO3.kgha", "Nutrient.NO3.kgha");
series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.NH4.kgha", "Nutrient.NH4.kgha");
series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.Urea.kgha", "Nutrient.Urea.kgha");
series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNO3.kgha", "Nutrient.PlantAvailableNO3.kgha");
series["XFieldName"] = series["XFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNH4.kgha", "Nutrient.PlantAvailableNH4.kgha");
}
if (series["YFieldName"] != null)
{
series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.NO3.kgha", "Nutrient.NO3.kgha");
series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.NH4.kgha", "Nutrient.NH4.kgha");
series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.Urea.kgha", "Nutrient.Urea.kgha");
series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNO3.kgha", "Nutrient.PlantAvailableNO3.kgha");
series["YFieldName"] = series["YFieldName"].ToString().Replace("SoilNitrogen.PlantAvailableNH4.kgha", "Nutrient.PlantAvailableNH4.kgha");
}
}
}
/// <summary>
/// Change Factor.Specifications to Factor.Specification. Also FactorValue
/// becomes CompositeFactor.
/// </summary>
/// <param name="root"></param>
/// <param name="fileName"></param>
private static void UpgradeToVersion56(JToken root, string fileName)
{
foreach (var factor in JsonUtilities.ChildrenRecursively(root as JObject, "Factor"))
{
var parent = JsonUtilities.Parent(factor);
string parentModelType = JsonUtilities.Type(parent);
if (parentModelType == "Factors")
{
var specifications = factor["Specifications"] as JArray;
if (specifications != null)
{
if (specifications.Count > 1)
{
// must be a compound factor.
// Change our Factor to a CompositeFactor
factor["$type"] = "Models.Factorial.CompositeFactor, Models";
// Remove the Factor from it's parent.
var parentChildren = parent["Children"] as JArray;
parentChildren.Remove(factor);
// Create a new site factor and add our CompositeFactor to the children list.
var siteFactor = JsonUtilities.ChildWithName(parent as JObject, "Site") as JObject;
if (siteFactor == null)
{
// Create a site factor
siteFactor = new JObject();
siteFactor["$type"] = "Models.Factorial.Factor, Models";
siteFactor["Name"] = "Site";
JArray siteFactorChildren = new JArray();
siteFactor["Children"] = siteFactorChildren;
// Add our new site factor to our models parent.
parentChildren.Add(siteFactor);
}
(siteFactor["Children"] as JArray).Add(factor);
}
else
{
// Convert array to string.
if (specifications.Count > 0)
{
factor["Specification"] = specifications[0].ToString();
}
}
}
}
else if (parentModelType == "Factor")
{
factor["$type"] = "Models.Factorial.CompositeFactor, Models";
}
}
foreach (var series in JsonUtilities.ChildrenRecursively(root as JObject, "Series"))
{
var factorToVaryColours = series["FactorToVaryColours"];
if (factorToVaryColours != null && factorToVaryColours.Value <string>() == "Simulation")
{
series["FactorToVaryColours"] = "SimulationName";
}
var factorToVaryMarkers = series["FactorToVaryMarkers"];
if (factorToVaryMarkers != null && factorToVaryMarkers.Value <string>() == "Simulation")
{
series["FactorToVaryMarkers"] = "SimulationName";
}
var factorToVaryLines = series["FactorToVaryLines"];
if (factorToVaryLines != null && factorToVaryLines.Value <string>() == "Simulation")
{
series["FactorToVaryLines"] = "SimulationName";
}
}
}
