public static (bool UseSettings, bool AskAgain) Show(string title, string caption)
{
MsgBox = new ProteaseSpecificMsgBox(title, caption);
MsgBox.ShowDialog();
return(UseSettings, AskAgain);
}
public static bool UseNonSpecificRecommendedSettings()
{
bool useRecommendedSettings = false;
//check with the user to update params
if (Params.AskAboutNonSpecificParams)
{
var results = ProteaseSpecificMsgBox.Show("Use Non-Specific Recommendations?",
"We recommend using the following parameters for non-specific searches:\n" +
"\t-Check 'Non-Specific Search' (Search Task Only)\n" +
"\t-Use '25' for 'Max Peptide Length'.\n\n" +
"Would you like to use these recommended settings?");
if (results.UseSettings)
{
useRecommendedSettings = true;
}
//else do nothing
//if they don't want to see this again, save the answer
if (!results.AskAgain)
{
Params.AskAboutNonSpecificParams = false;
Params.UseNonSpecificParams = results.UseSettings;
Toml.WriteFile(Params, Path.Combine(GlobalVariables.DataDir, @"GUIsettings.toml"), MetaMorpheusTask.tomlConfig);
}
}
else if (Params.UseNonSpecificParams) //user didn't want to check in, but wanted to update last time
{
useRecommendedSettings = true;
}
//else do nothing
return(useRecommendedSettings);
}
public static bool UseTopDownRecommendedSettings()
{
bool useRecommendedSettings = false;
//check with the user to update params
if (Params.AskAboutTopDownParams)
{
var results = ProteaseSpecificMsgBox.Show("Use Top-Down Recommendations?",
"We recommend using the following parameters for top-down searches:\n" +
"\t-Uncheck 'Use Provided Precursor'\n" +
"\t-Use '60' for 'Deconvolution Max Assumed Charge State'\n" +
"\t-Uncheck 'Trim MS2 Peaks'\n" +
"\t-Uncheck all variable mods (Please use a GPTMD database instead)\n" +
"\t-SEARCH TASK ONLY: Check 'No Quantification'\n" +
"\t-SEARCH TASK ONLY: Check '1, 2, or 3 Missed Monoisotopic Peaks'\n" +
"\t-GPTMD TASK ONLY: Search for only acetylation, phosphorylation, and oxidation of M\n\n" +
"Would you like to use these recommended settings?");
if (results.UseSettings)
{
useRecommendedSettings = true;
}
//else do nothing
//if they don't want to see this again, save the answer
if (!results.AskAgain)
{
Params.AskAboutTopDownParams = false;
Params.UseTopDownParams = results.UseSettings;
Toml.WriteFile(Params, Path.Combine(GlobalVariables.DataDir, @"GUIsettings.toml"), MetaMorpheusTask.tomlConfig);
}
}
else if (Params.UseTopDownParams) //user didn't want to check in, but wanted to update last time
{
useRecommendedSettings = true;
}
//else do nothing
return(useRecommendedSettings);
}
