private void InitializeExperDesign()
{
SpectraFileExperimentalDesign.Clear();
foreach (var item in SpectraFiles.Where(p => p.Use).Select(p => p.FilePath))
{
SpectraFileExperimentalDesign.Add(new ExperimentalDesignForDataGrid(item));
}
if (SpectraFileExperimentalDesign.Any())
{
outputPath = Directory.GetParent(SpectraFileExperimentalDesign.First().FullFilePathWithExtension).FullName;
outputPath = Path.Combine(outputPath, GlobalVariables.ExperimentalDesignFileName);
}
DgQuant.DataContext = SpectraFileExperimentalDesign;
// read/set existing experimental design
var filePaths = SpectraFileExperimentalDesign.Select(p => p.FullFilePathWithExtension).ToList();
var existingDesign = ExperimentalDesign.ReadExperimentalDesign(outputPath, filePaths, out var errors);
foreach (SpectraFileInfo fileInfo in existingDesign)
{
ExperimentalDesignForDataGrid match = SpectraFileExperimentalDesign.FirstOrDefault(p => p.FullFilePathWithExtension == fileInfo.FullFilePathWithExtension);
if (match != null)
{
match.Condition = fileInfo.Condition;
match.Biorep = (fileInfo.BiologicalReplicate + 1).ToString();
match.Techrep = (fileInfo.TechnicalReplicate + 1).ToString();
match.Fraction = (fileInfo.Fraction + 1).ToString();
}
}
}
private void ReadExperDesignFromTsv(string filePath)
{
if (!File.Exists(filePath))
{
return;
}
var lines = File.ReadAllLines(filePath);
Dictionary <string, int> typeToIndex = new Dictionary <string, int>();
for (int l = 0; l < lines.Length; l++)
{
var split = lines[l].Split('\t');
if (l == 0)
{
foreach (var type in split)
{
typeToIndex.Add(type, Array.IndexOf(split, type));
}
}
else
{
ExperimentalDesignForDataGrid file = spectraFilesQuantSets.Where(p => p.FileName == split[typeToIndex["FileName"]]).FirstOrDefault();
if (file == null)
{
continue;
}
file.Condition = split[typeToIndex["Condition"]];
file.Biorep = split[typeToIndex["Biorep"]];
file.Fraction = split[typeToIndex["Fraction"]];
file.Techrep = split[typeToIndex["Techrep"]];
}
}
}
