public MascotPeptide(BinaryReader reader)
{
mass = reader.ReadDouble();
deltaMass = reader.ReadSingle();
sequence = reader.ReadString();
modifications = PeptideModificationState.Read(reader);
mascotScore = reader.ReadSingle();
altScore = reader.ReadSingle();
pep = reader.ReadDouble();
int len = reader.ReadInt32();
proteinIndex = new int[len];
for (int i = 0; i < len; i++)
{
proteinIndex[i] = reader.ReadInt32();
}
}
public MsmsHit(BinaryReader reader)
{
rawFileIndex = reader.ReadInt32();
scanNumber = reader.ReadInt32();
silacIndex = reader.ReadInt32();
byte x = reader.ReadByte();
switch (x)
{
case 0:
type = MascotQueryType.Silac;
break;
case 1:
type = MascotQueryType.Isotope;
break;
case 2:
type = MascotQueryType.Peak;
break;
}
pep = reader.ReadDouble();
score = reader.ReadDouble();
altScore = reader.ReadDouble();
deltaScoreAll = reader.ReadDouble();
deltaScoreDifferentPep = reader.ReadDouble();
labelModifications = PeptideModificationState.Read(reader);
trueModifications = PeptideModificationState.Read(reader);
elutionTime = reader.ReadDouble();
id = reader.ReadInt32();
mz = reader.ReadDouble();
monoisotopicMz = reader.ReadDouble();
evidenceId = reader.ReadInt32();
ptmScore = reader.ReadDouble();
deltaPtmScore = reader.ReadDouble();
ptmScoreCounts = reader.ReadInt32();
ptmScoreFinished = reader.ReadBoolean();
massErrorPpm = reader.ReadDouble();
changed = reader.ReadBoolean();
int len = reader.ReadInt32();
description = new MsmsPeakAnnotation[len];
intensities = new float[len];
massDiffs = new float[len];
for (int i = 0; i < len; i++)
{
description[i] = new MsmsPeakAnnotation(reader);
intensities[i] = reader.ReadSingle();
massDiffs[i] = reader.ReadSingle();
}
charge = reader.ReadInt32();
modProbabilities = new Dictionary <ushort, double[]>();
len = reader.ReadInt32();
ushort[] keys = new ushort[len];
for (int i = 0; i < keys.Length; i++)
{
keys[i] = reader.ReadUInt16();
}
foreach (ushort key in keys)
{
len = reader.ReadInt32();
double[] value = new double[len];
for (int i = 0; i < value.Length; i++)
{
value[i] = reader.ReadDouble();
}
modProbabilities.Add(key, value);
}
modScoreDiffs = new Dictionary <ushort, double[]>();
len = reader.ReadInt32();
keys = new ushort[len];
for (int i = 0; i < keys.Length; i++)
{
keys[i] = reader.ReadUInt16();
}
foreach (ushort key in keys)
{
len = reader.ReadInt32();
double[] value = new double[len];
for (int i = 0; i < value.Length; i++)
{
value[i] = reader.ReadDouble();
}
modScoreDiffs.Add(key, value);
}
}