public static void Save(string directory, Madingley.Common.Configuration c)
{
CreateDirectories(directory);
var convertTimeSteps = 12;
var parameters = new Tuple <string, string>[]
{
Tuple.Create("Parameter", "Value"),
Tuple.Create("Timestep Units", c.GlobalModelTimeStepUnit),
Tuple.Create("Length of simulation (years)", (c.NumTimeSteps / convertTimeSteps).ToString()),
Tuple.Create("Burn-in (years)", (c.BurninTimeSteps / convertTimeSteps).ToString()),
Tuple.Create("Impact duration (years)", (c.ImpactTimeSteps / convertTimeSteps).ToString()),
Tuple.Create("Recovery duration (years)", (c.RecoveryTimeSteps / convertTimeSteps).ToString()),
Tuple.Create("Plankton size threshold", c.PlanktonDispersalThreshold.ToString()),
Tuple.Create("Draw Randomly", c.DrawRandomly ? "yes" : "no"),
Tuple.Create("Extinction Threshold", c.ExtinctionThreshold.ToString()),
Tuple.Create("Maximum Number Of Cohorts", c.MaxNumberOfCohorts.ToString()),
Tuple.Create("Run Cells In Parallel", c.RunCellsInParallel ? "yes" : "no"),
Tuple.Create("Run Simulations In Parallel", c.RunSimulationsInParallel ? "yes" : "no"),
Tuple.Create("Run Single Realm", c.RunRealm),
Tuple.Create("Impact Cell Index", System.String.Join(";", c.ImpactCellIndices)),
// Tuple.Create("ImpactAll", if c.ImpactAll then "yes" else "no"),
Tuple.Create("Dispersal only", c.DispersalOnly ? "yes" : "no"),
Tuple.Create("Dispersal only type", c.DispersalOnlyType)
};
using (var writer = new StreamWriter(Path.Combine(directory, "SimulationControlParameters.csv")))
{
parameters.ToList().ForEach(kv => writer.WriteLine(String.Format("{0},{1}", kv.Item1, kv.Item2)));
}
var fileLocationParameters = new Tuple <string, string>[]
{
Tuple.Create("Parameter", "Value"),
Tuple.Create("Mass Bin Filename", "MassBinDefinitions.csv"),
Tuple.Create("Environmental Data File", "EnvironmentalDataLayers.csv"),
Tuple.Create("Cohort Functional Group Definitions File", "CohortFunctionalGroupDefinitions.csv"),
Tuple.Create("Stock Functional Group Definitions File", "StockFunctionalGroupDefinitions.csv"),
Tuple.Create("Ecological parameters file", "EcologicalParameters.csv")
};
using (var writer = new StreamWriter(Path.Combine(directory, "FileLocationParameters.csv")))
{
fileLocationParameters.ToList().ForEach(kv => writer.WriteLine(String.Format("{0},{1}", kv.Item1, kv.Item2)));
}
EcologicalParameters.Save(c.EcologicalParameters, Path.Combine(directory, "Ecological Definition Files", "EcologicalParameters.csv"));
FunctionalGroupDefinitions.Save(c.CohortFunctionalGroupDefinitions, Path.Combine(directory, "Ecological Definition Files", "CohortFunctionalGroupDefinitions.csv"));
FunctionalGroupDefinitions.Save(c.StockFunctionalGroupDefinitions, Path.Combine(directory, "Ecological Definition Files", "StockFunctionalGroupDefinitions.csv"));
ScenarioParameters.SaveScenarios(c.ScenarioParameters, Path.Combine(directory, "Initial Model State Setup", "Scenarios.csv"));
}
public static Madingley.Common.Configuration RandomConfiguration(Random rnd)
{
var convertTimeSteps = 12;
var yearCount = rnd.Next(0, (int)System.UInt16.MaxValue);
var globalModelTimeStepUnit = "Month";
var numTimeSteps = yearCount * convertTimeSteps;
var burninTimeSteps = rnd.Next(0, yearCount) * convertTimeSteps;
var impactTimeSteps = rnd.Next(0, yearCount) * convertTimeSteps;
var recoveryTimeSteps = rnd.Next(0, yearCount) * convertTimeSteps;
var runCellsInParallel = Common.RandomBool(rnd);
var runSimulationsInParallel = Common.RandomBool(rnd);
var runRealm = Common.RandomString(rnd, 6).ToLower();
var drawRandomly = Common.RandomBool(rnd);
var extinctionThreshold = Common.RandomFloat(rnd);
var maxNumberOfCohorts = rnd.Next();
var dispersalOnly = Common.RandomBool(rnd);
var dispersalOnlyType = Common.RandomString(rnd, 9);
var planktonDispersalThreshold = Common.RandomFloat(rnd);
var cohortFunctionalGroupDefinitions = FunctionalGroupDefinitions.RandomFunctionalGroupDefinitions(rnd);
var stockFunctionalGroupDefinitions = FunctionalGroupDefinitions.RandomFunctionalGroupDefinitions(rnd);
var impactCellIndices = Common.RandomIntArray(rnd, 12);
var impactAll = false; // TODO rndBool()
var scenarioParameters = RandomScenarioParameters(rnd, 13, 14);
var scenarioIndex = 0;
var simulation = 0;
var ecologicalParameters = EcologicalParameters.RandomEcologicalParameters(rnd);
var fileNames = new string[] {
@"Model setup\SimulationControlParameters.csv",
@"Model setup\FileLocationParameters.csv",
@"Model setup\Ecological Definition Files\CohortFunctionalGroupDefinitions.csv",
@"Model setup\Ecological Definition Files\StockFunctionalGroupDefinitions.csv",
@"Model setup\Ecological Definition Files\EcologicalParameters.csv",
@"Model setup\Initial Model State Setup\Scenarios.csv"
};
return(new Madingley.Common.Configuration(
globalModelTimeStepUnit,
numTimeSteps,
burninTimeSteps,
impactTimeSteps,
recoveryTimeSteps,
runCellsInParallel,
runSimulationsInParallel,
runRealm,
drawRandomly,
extinctionThreshold,
maxNumberOfCohorts,
dispersalOnly,
dispersalOnlyType,
planktonDispersalThreshold,
cohortFunctionalGroupDefinitions,
stockFunctionalGroupDefinitions,
impactCellIndices,
impactAll,
scenarioParameters,
scenarioIndex,
simulation,
ecologicalParameters,
fileNames));
}
