The null cycle space reorganizer.
Inheritance: SpaceReorganizer
        public void LevelFiveTest()
        {
            var cycleTestChainLevel5 = new Chain("adbaacbbaacaadbaa");

            var reorganizer = new NullCycleSpaceReorganizer(5);
            var result = reorganizer.Reorganize(testChain);
            Assert.AreEqual(cycleTestChainLevel5, result);
        }
        public void LevelOneTest()
        {
            var cycleTestChainLevel1 = new Chain("adbaacbbaacaa");

            var rebulder = new NullCycleSpaceReorganizer(1);
            var result = rebulder.Reorganize(testChain);
            Assert.AreEqual(cycleTestChainLevel1, result);
        }
コード例 #3
0
        public void GetThirdLevelChainTest()
        {
            matrix = new Matrix(testChain.Alphabet.Cardinality, 3);

            var reorganizer = new NullCycleSpaceReorganizer(2);
            testChain = (BaseChain)reorganizer.Reorganize(testChain);

            var it = new IteratorStart(testChain, 3, 1);
            while (it.Next())
            {
                var chain = it.Current();
                var arrayToTeach = new int[chain.GetLength()];
                for (var i = 0; i < chain.GetLength(); i++)
                {
                    arrayToTeach[i] = testChain.Alphabet.IndexOf(chain[i]);
                }

                matrix.Add(arrayToTeach);
            }

            var toGet = new int[1];

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(6, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(3, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"c");
            Assert.AreEqual(2, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"d");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet = new int[2];

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(3, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"c");
            Assert.AreEqual(2, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"d");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(2, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"c");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"d");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"c");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"d");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"c");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"d");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet = new int[3];

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"c");
            Assert.AreEqual(2, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"d");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(2, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"c");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"c");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(1, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"a");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"a");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"c");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));

            toGet[0] = testChain.Alphabet.IndexOf((ValueString)"d");
            toGet[1] = testChain.Alphabet.IndexOf((ValueString)"b");
            toGet[2] = testChain.Alphabet.IndexOf((ValueString)"b");
            Assert.AreEqual(0, matrix.FrequencyFromObject(toGet));
        }